View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8792_low_14 (Length: 263)
Name: NF8792_low_14
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8792_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 54615745 - 54615991
Alignment:
| Q |
1 |
gaatccgaataccaagaaaaactgtgtagctgaagatacttcaaactcaaaggaaaattcaaaagtttctgatgctcaaaagactgattacattcatgtt |
100 |
Q |
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| T |
54615745 |
gaatccgaataccaagaagaactgtgtagcagaagatacttcaaactcaaaggaaaattcaaaagtttctgatgttcaaaagactgattacattcatgtt |
54615844 |
T |
|
| Q |
101 |
cgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagtaataataatagtttagtttggtttctggctgagaaaaataaaatca |
200 |
Q |
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| T |
54615845 |
cgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagtagtaataatagtttagtttggtttctggctgagaaaaataaaatca |
54615944 |
T |
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| Q |
201 |
agttttagtcttatatctgaataatcatgtatgatgcaggttagaag |
247 |
Q |
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| T |
54615945 |
agttttagtcttatatctgaataattatgtatgatgcaggttagaag |
54615991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 26483996 - 26484067
Alignment:
| Q |
84 |
ctgattacattcatgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagta |
155 |
Q |
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||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||| |
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| T |
26483996 |
ctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagta |
26484067 |
T |
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