View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8792_low_17 (Length: 250)

Name: NF8792_low_17
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8792_low_17
NF8792_low_17
[»] chr1 (1 HSPs)
chr1 (1-241)||(1717513-1717753)
[»] chr3 (20 HSPs)
chr3 (1-189)||(19951469-19951657)
chr3 (6-200)||(17115050-17115244)
chr3 (5-190)||(26647348-26647533)
chr3 (6-131)||(26653554-26653679)
chr3 (5-145)||(24839563-24839703)
chr3 (5-200)||(19858406-19858601)
chr3 (6-144)||(20015788-20015926)
chr3 (20-231)||(19812589-19812800)
chr3 (6-144)||(20046513-20046651)
chr3 (30-231)||(19849302-19849503)
chr3 (15-189)||(19838741-19838915)
chr3 (1-131)||(26652121-26652251)
chr3 (5-145)||(19944106-19944246)
chr3 (1-102)||(19853932-19854033)
chr3 (6-131)||(19956490-19956615)
chr3 (6-203)||(19818894-19819091)
chr3 (18-189)||(20036202-20036373)
chr3 (6-131)||(19832275-19832400)
chr3 (1-81)||(20033919-20033999)
chr3 (36-131)||(19989934-19990029)
[»] chr5 (2 HSPs)
chr5 (6-200)||(9815371-9815565)
chr5 (6-145)||(26354514-26354653)
[»] chr8 (3 HSPs)
chr8 (6-145)||(11544462-11544601)
chr8 (30-144)||(22689287-22689401)
chr8 (6-88)||(22655903-22655985)
[»] chr4 (1 HSPs)
chr4 (6-141)||(6397324-6397461)
[»] chr7 (3 HSPs)
chr7 (6-101)||(12495578-12495677)
chr7 (6-145)||(12579676-12579817)
chr7 (6-101)||(12519382-12519478)
[»] chr2 (1 HSPs)
chr2 (6-102)||(39191598-39191696)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 1717753 - 1717513
Alignment:
Q  1 atccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717753 atccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatca 1717654  T
Q  101 tcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatcatgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1717653 tcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatcgtgg 1717554  T
Q  201 tttttagttgtgattgtaaacttttgaaccttcccaacacc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1717553 tttttagttgtgattgtaaacttttgaaccttcccaacacc 1717513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 19951657 - 19951469
Alignment:
Q  1 atccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatca 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19951657 atccaccaaatctttcttaaatggcaccaaaatttcttcattcggataaaacattccacacttatcagcatatctaacatatggacgccaaataaaatca 19951558  T
Q  101 tcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggtt 189  Q
     | ||||||| ||||||||  ||||||||||| |  ||| |||||   |||  | || ||||||||||| ||||||||||||| |||||    
T  19951557 cccatagctgcgtctaatgctaacctaacatcgtggattctcaagggcttaaccttatgccacctaaacaaaaaagggtctccatggtt 19951469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 17115244 - 17115050
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    |||||||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||| ||||||||| |     
T  17115244 ccaaatcttttttgaatggtaccaaaatttcatcatttggataaaacattccacacttatcagcatatctaatgtatggacgccaaagaaaatcatcgac 17115145  T
Q  106 agctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatcatgg 200  Q
    |||| |||||||||  | | ||||||  |||||||||| | | | |  | || ||||||||||| | ||||||||||| |||||| ||| |||||    
T  17115144 agctaagtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttgatcaacatgg 17115050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 26647533 - 26647348
Alignment:
Q  5 accaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaa 104  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||| | ||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  26647533 accaaatctttcttaaatggtaccgaaatttcatcatttggataaaacaattcacacttatcagcatatctaacataaggacgccaaagaaaatcatcaa 26647434  T
Q  105 tagctgagtctaatgtcaacctaacatcttcaattttcaag-tctttactcatacgccacctaaaccaaaaagggtctccgtggttg 190  Q
     ||| || |||| || | || |||||   |||||||||||| |||| || | || ||||||||||| | ||||||||||| ||||||    
T  26647433 cagccgaatctagtgcccacttaacactgtcaattttcaagatcttaac-cttatgccacctaaacaacaaagggtctccttggttg 26647348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 26653679 - 26653554
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    ||||||| ||||||||||||||| ||||||||| || ||||||||||||||||| ||| | || ||||||||||||||||||||||| ||||||||||||    
T  26653679 ccaaatccttcttaaatggtacccaaatttcattatttggataaaacattccacacttgttaggatatctaacatatggacgccaaagaaaatcatcaat 26653580  T
Q  106 agctgagtctaatgtcaacctaacat 131  Q
     ||||||||||||| |||||| ||||    
T  26653579 tgctgagtctaatgccaacctcacat 26653554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 24839563 - 24839703
Alignment:
Q  5 accaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaa 104  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||| ||||||| |||||  |||||| |||||||||||||||||||| |    
T  24839563 accaaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatcga 24839662  T
Q  105 tagctgagtctaatgtcaacctaacatcttcaattttcaag 145  Q
    |  |||||||||||| |||||| ||||  ||||||||||||    
T  24839663 tgactgagtctaatgccaacctcacattgtcaattttcaag 24839703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 19858601 - 19858406
Alignment:
Q  5 accaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaa 104  Q
    ||||||||||||| | ||| |||| ||||||| |||| ||||||||||| ||||| |||||| ||||||||||| || ||||||||||||||||||||||    
T  19858601 accaaatctttctaatatgatacccaaatttcgtcatttggataaaacagtccacacttatctgcatatctaacgtaaggacgccaaataaaatcatcaa 19858502  T
Q  105 tagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatcatgg 200  Q
    |||| |||||||||| |||| ||||||  |||| ||||||| | |||  | || ||||||||||| | ||||| ||||| || ||| ||| |||||    
T  19858501 tagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttgatcaacatgg 19858406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 20015788 - 20015926
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    |||||||||||||||||||||| |||| | |||||| |||||||||||   ||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  20015788 ccaaatctttcttaaatggtacaaaaaatgcatcatttggataaaacaaatcacacttatcagcatatctgaaatatggacgccaaagaaaatcatcaat 20015887  T
Q  106 agctgagtctaatgtcaacctaacatcttcaattttcaa 144  Q
    |||||||||||||| || | ||||||  |||||||||||    
T  20015888 agctgagtctaatgccaccataacattgtcaattttcaa 20015926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 19812800 - 19812589
Alignment:
Q  20 aatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaatagctgagtctaatg 119  Q
    ||||||||| |||||||||||| ||||||||||| | ||| |||||| ||||||||||||||||||||||||| ||||||||| | ||| |||||||| |    
T  19812800 aatggtaccgaaatttcatcatttggataaaacaatgcacacttatcggcatatctaacatatggacgccaaagaaaatcatccacagccgagtctaacg 19812701  T
Q  120 tcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatcatggtttttagttgtgattgtaa 219  Q
      ||||||||||  ||||||   |||||  ||  | || ||||||||||| |||||||||| || |||||| ||| ||| |||| | |||||| ||| ||    
T  19812700 ctaacctaacattgtcaattgataagtccgtaaccttatgccacctaaacaaaaaagggtcgccatggttgatcaacatagtttgttgttgtggttgcaa 19812601  T
Q  220 acttttgaacct 231  Q
    | ||||||||||    
T  19812600 atttttgaacct 19812589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 20046651 - 20046513
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    ||||||| ||||||||||||||| ||||||| | || ||||||||| ||||||| ||| |||| ||||||||||||||||||||||| ||||||||| |     
T  20046651 ccaaatccttcttaaatggtacccaaatttcgttatttggataaaaaattccacacttgtcaggatatctaacatatggacgccaaagaaaatcatcgac 20046552  T
Q  106 agctgagtctaatgtcaacctaacatcttcaattttcaa 144  Q
    || ||||||||||| |||| ||||||  |||||||||||    
T  20046551 agttgagtctaatgccaacttaacattatcaattttcaa 20046513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 19849503 - 19849302
Alignment:
Q  30 aaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaatagctgagtctaatgtcaacctaac 129  Q
    ||||| |||||| ||||||||||||||||   |||| |||||||||| ||||||||||||||| ||||||||| ||||| |||||||||| |||||||||    
T  19849503 aaattccatcatttggataaaacattccataattatgagcatatctagcatatggacgccaaagaaaatcatccatagccgagtctaatgccaacctaac 19849404  T
Q  130 atcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatcatggtttttagttgtgattgtaaacttttgaac 229  Q
    ||  |||||||||||| | | |  | || |||| |||||| | ||||| || || |||||||||| |||||||| | | |||| ||| ||| ||||||||    
T  19849403 attgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttggtcaacatggtttgtggctgtggttgcaaatttttgaac 19849304  T
Q  230 ct 231  Q
    ||    
T  19849303 ct 19849302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 19838915 - 19838741
Alignment:
Q  15 tcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaatagctgagtc 114  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||| |||||||| ||||| ||||||||||||||||| ||| ||||| ||||| |||||    
T  19838915 tcttaaatggtaccaaaatttcatcatttggataaaacagttcacacttatcagaatatcgaacatatggacgccaaagaaagtcatccatagccgagtc 19838816  T
Q  115 taatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggtt 189  Q
    ||| | || ||||| ||  |||||| ||||| | |||    || ||||||||||| |||||||||| || |||||    
T  19838815 taaagccatcctaatattgtcaattatcaaggccttaactttatgccacctaaacaaaaaagggtccccctggtt 19838741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26652251 - 26652121
Alignment:
Q  1 atccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatca 100  Q
    ||||||||||||||||||||||||||||||| || | |||| ||||||||||| | ||| |||||| ||||| | |||||| ||||||||||||||||||    
T  26652251 atccaccaaatctttcttaaatggtaccaaagttccgtcatttggataaaacacttcacacttatctgcataccgaacataaggacgccaaataaaatca 26652152  T
Q  101 tcaatagctgagtctaatgtcaacctaacat 131  Q
    |  |||||||| ||||||| |||||| ||||    
T  26652151 ttgatagctgaatctaatgccaacctcacat 26652121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 19944246 - 19944106
Alignment:
Q  5 accaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaa 104  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||| | | ||||| |||||||||||||  |||||| ||||| |||||||||||||  |    
T  19944246 accaaatcttttttaaatggtaccaaagtttcatcatttggataatatactccacacttatcagcatattgaacataaggacggcaaataaaatcattga 19944147  T
Q  105 tagctgagtctaatgtcaacctaacatcttcaattttcaag 145  Q
    ||||||| ||||||| |||||  ||||  ||||||||||||    
T  19944146 tagctgaatctaatgccaaccccacattgtcaattttcaag 19944106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 19854033 - 19853932
Alignment:
Q  1 atccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatca 100  Q
    |||||||||||| |||||||||||||||  |||||||||||  || ||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  19854033 atccaccaaatcgttcttaaatggtacccgaatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatca 19853934  T
Q  101 tc 102  Q
    ||    
T  19853933 tc 19853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 19956615 - 19956490
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| |  ||||  |||| || ||||| ||||||||||||||||| ||| ||||| ||    
T  19956615 ccaaatccttcttaaatggtaccaaaatttcatcatttggataaaatagcccacatttatgagaatatcgaacatatggacgccaaagaaagtcatccat 19956516  T
Q  106 agctgagtctaatgtcaacctaacat 131  Q
    ||| |||||||||| || ||||||||    
T  19956515 agccgagtctaatgccatcctaacat 19956490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 19819091 - 19818894
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    |||||||  |||||||||||||||||||| ||||||  ||||||||||   ||| |||||||| ||||| ||||||||||||||||| ||| |||||  |    
T  19819091 ccaaatccatcttaaatggtaccaaaattccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatcctt 19818992  T
Q  106 agctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcat-acgccacctaaaccaaaaagggtctccgtggttggtcatcatggttt 203  Q
    ||| |||||||||| || ||||||||  ||||||| |||| | | |  ||| | ||||||||||| ||||||||||||| |||||  ||| ||||||||    
T  19818991 agccgagtctaatgccatcctaacattgtcaatttccaaggcctga-acatcatgccacctaaacaaaaaagggtctccatggtttatcaacatggttt 19818894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 20036202 - 20036373
Alignment:
Q  18 taaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaatagctgagtctaa 117  Q
    |||||||||||||| ||||||||| |||||||| || | ||  |||||||| ||||| ||||||||||||||||| ||| ||||| ||||| ||||||||    
T  20036202 taaatggtaccaaagtttcatcatttggataaagcagttcaaacttatcagaatatcgaacatatggacgccaaagaaagtcatccatagccgagtctaa 20036301  T
Q  118 tgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggtt 189  Q
    || || ||||||||  |||||  |||||   |||  | || ||||||||||| |||||||||| || |||||    
T  20036302 tgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagggtccccatggtt 20036373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 19832400 - 19832275
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    |||||||  |||||||||||||||||||| ||||||  ||||||||||   ||| |||||||| ||||| ||||||||||||||||| ||| |||||  |    
T  19832400 ccaaatccatcttaaatggtaccaaaattccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatcctt 19832301  T
Q  106 agctgagtctaatgtcaacctaacat 131  Q
    |||  ||||||||| || ||||||||    
T  19832300 agccaagtctaatgccatcctaacat 19832275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 20033919 - 20033999
Alignment:
Q  1 atccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacata 81  Q
    |||||||||||| ||||||||||||||  ||||||||||||  |||||||||| || || |||||||||||||||||||||    
T  20033919 atccaccaaatcattcttaaatggtactgaaatttcatcattcggataaaacagtctacacttatcagcatatctaacata 20033999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 19990029 - 19989934
Alignment:
Q  36 catcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaatagctgagtctaatgtcaacctaacat 131  Q
    |||||| ||||||||||| | ||| ||| |||||| ||||||||||||||||||||| ||||| ||   | ||||||| ||||  |||||||||||    
T  19990029 catcatttggataaaacagttcacacttctcagcaaatctaacatatggacgccaaagaaaatgattctttgctgagtttaattccaacctaacat 19989934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 9815565 - 9815371
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    |||||||||||||||||||||||||||   |||||| |||||||||||  || |  |||||||||||||||| |||||||||||||| ||||||||| ||    
T  9815565 ccaaatctttcttaaatggtaccaaaagcgcatcatttggataaaacacaccgcagttatcagcatatctaaaatatggacgccaaagaaaatcatccat 9815466  T
Q  106 agctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatcatgg 200  Q
    ||| |||||||||| || | ||||||  |||||||||||| | | |  | || | ||||||||| | |||||||||||||| ||| ||| |||||    
T  9815465 agccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgg 9815371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 26354514 - 26354653
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||| |  ||||  | ||| |||||||||| |||||||||||||| ||||||||  ||    
T  26354514 ccaaatctttcttaaatggtaccgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcattgat 26354613  T
Q  106 agctgagtctaatgtcaacctaacatcttcaattttcaag 145  Q
    |||  ||||||||  || | ||||||  ||||||||||||    
T  26354614 agccaagtctaattccagcttaacattgtcaattttcaag 26354653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 11544601 - 11544462
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaat 105  Q
    ||||||| |||||||  ||||||||| ||||||||| ||||||||||||| ||  |||||| ||||||  ||||||||| ||||||| |||||||||  |    
T  11544601 ccaaatccttcttaagcggtaccaaagtttcatcatttggataaaacatttcaaacttatcggcatattgaacatatgggcgccaaagaaaatcatcctt 11544502  T
Q  106 agctgagtctaatgtcaacctaacatcttcaattttcaag 145  Q
    |||||| ||||||| |||||| ||||  ||||||||||||    
T  11544501 agctgaatctaatgccaacctcacattatcaattttcaag 11544462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 22689287 - 22689401
Alignment:
Q  30 aaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatcaatagctgagtctaatgtcaacctaac 129  Q
    |||||||||| | ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||| || ||| || || |||||||| ||    
T  22689287 aaatttcatcctttggataaaacactccacacttatcagcatatctaacataaggacgccaaataaaattatcaacagttgaatccaacgtcaacctcac 22689386  T
Q  130 atcttcaattttcaa 144  Q
    ||  |||||||||||    
T  22689387 attgtcaattttcaa 22689401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 22655903 - 22655985
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgc 88  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||   | | |||||||| ||||| |||||||||||||    
T  22655903 ccaaatccttcttaaatggtaccaaaatttcatcattaggataaaacagctcgcacttatcagaatatcgaacatatggacgc 22655985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 6397324 - 6397461
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaac--attccacgcttatcagcatatctaacatatggacgccaaataaaatcatca 103  Q
    ||||||| ||||||||||||||||| ||||| | || |||||||||   ||||||| ||| |||| ||||||||||||||||||||||| ||||| |||     
T  6397324 ccaaatccttcttaaatggtaccaagatttcgttatttggataaaaagaattccacacttctcaggatatctaacatatggacgccaaagaaaattatcg 6397423  T
Q  104 atagctgagtctaatgtcaacctaacatcttcaatttt 141  Q
    | || ||||||| ||| |||| ||| ||  ||||||||    
T  6397424 acagttgagtctcatgccaacttaatattgtcaatttt 6397461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 12495578 - 12495677
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggat----aaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcat 101  Q
    ||||||| ||||||||||||||| ||||||||| || |||||    |||| ||||||| ||| |||| ||||||| ||||||||||||||| ||||||||    
T  12495578 ccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaaaattccacacttctcaggatatctagcatatggacgccaaagaaaatcat 12495677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 12579676 - 12579817
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaa--acattccacgcttatcagcatatctaacatatggacgccaaataaaatcatca 103  Q
    ||||||| ||||||||||||||| ||||||||| || ||||||||  | ||||||| ||| | || ||||||| |||||||||| |||| |||||||| |    
T  12579676 ccaaatccttcttaaatggtacccaaatttcattatttggataaaagaaattccacacttcttaggatatctagcatatggacgtcaaagaaaatcatta 12579775  T
Q  104 atagctgagtctaatgtcaacctaacatcttcaattttcaag 145  Q
    | |  |||||||||||  ||| ||||||  ||||||| ||||    
T  12579776 acacttgagtctaatgcaaacttaacattgtcaatttgcaag 12579817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 12519382 - 12519478
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggat--aaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcat 101  Q
    ||||||| ||||||||||||||| ||||||||| || |||||  |||| ||||||| ||| |||| ||||||| |||||||||| |||| ||||||||    
T  12519382 ccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaattccacacttctcaggatatctagcatatggacg-caaagaaaatcat 12519478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 39191598 - 39191696
Alignment:
Q  6 ccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattcc-acgctt-atcagcatatctaacatatggacgccaaataaaatcatc 102  Q
    ||||||| |||||||  ||||||||| ||||||| | ||||||||||||| | || ||| ||||||||||  ||||||||||||||||| |||||||||    
T  39191598 ccaaatccttcttaagcggtaccaaagtttcatcctttggataaaacatttctacactttatcagcatattgaacatatggacgccaaagaaaatcatc 39191696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University