View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8792_low_18 (Length: 236)
Name: NF8792_low_18
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8792_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 9803567 - 9803366
Alignment:
| Q |
22 |
catgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9803567 |
catgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatc |
9803468 |
T |
|
| Q |
122 |
cttcttcttctgtgaagaatttggaatattttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttcttcatc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9803467 |
cttcttcttctgtgaagaatttggaatattttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttcttcatc |
9803368 |
T |
|
| Q |
222 |
tc |
223 |
Q |
| |
|
|| |
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|
| T |
9803367 |
tc |
9803366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 37738521 - 37738420
Alignment:
| Q |
64 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
163 |
Q |
| |
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|||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||| ||||||| |
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| T |
37738521 |
tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt |
37738422 |
T |
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| Q |
164 |
ca |
165 |
Q |
| |
|
|| |
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|
| T |
37738421 |
ca |
37738420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 19814388 - 19814274
Alignment:
| Q |
73 |
atattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagt |
172 |
Q |
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|||||||| |||| ||||||| | || ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19814388 |
atattcatttctaaaaatgttgttttccatgatcatatacttccttgtccttcttcttttgtgaagaatttggaatattttccattttcttcatctcagt |
19814289 |
T |
|
| Q |
173 |
cttctacttcatcat |
187 |
Q |
| |
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||| ||||||||| |
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| T |
19814288 |
tatctccttcatcat |
19814274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 18476614 - 18476727
Alignment:
| Q |
64 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
163 |
Q |
| |
|
|||||||| |||||||||| ||||||||| || |||||||| ||||| |||||||||||| ||||||| |||||||||||||||| |||||||||||| |
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| T |
18476614 |
tctagagaaatattcatctatagaaatgtcatctttcatgatcatattcttccttatcctacttcttcaatgaagaatttggaataatttccattttctc |
18476713 |
T |
|
| Q |
164 |
catctcagtcttct |
177 |
Q |
| |
|
||||||| |||||| |
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|
| T |
18476714 |
catctcaatcttct |
18476727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 3003923 - 3004024
Alignment:
| Q |
64 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
163 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||| ||||||| |
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| T |
3003923 |
tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt |
3004022 |
T |
|
| Q |
164 |
ca |
165 |
Q |
| |
|
|| |
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|
| T |
3004023 |
ca |
3004024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 23681221 - 23681322
Alignment:
| Q |
64 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
163 |
Q |
| |
|
|||||||| || || |||||||||||| | || |||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||| ||||||| |
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| T |
23681221 |
tctagagaaatctttatctctagaaatataatttttcatgatcatattcttccttatcctccttcatctgacaagaatttggaatattttcctttttctt |
23681320 |
T |
|
| Q |
164 |
ca |
165 |
Q |
| |
|
|| |
|
|
| T |
23681321 |
ca |
23681322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 36732380 - 36732278
Alignment:
| Q |
64 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
163 |
Q |
| |
|
|||||||| || || || ||||||||||| || |||||||| ||||| |||||||||||| |||| ||| |||||||||||||||||||| ||||||| |
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| T |
36732380 |
tctagagaaatctttatatctagaaatgtaatttttcatgatcatattcttccttatcctccttcatcttaaaagaatttggaatattttcctttttctt |
36732281 |
T |
|
| Q |
164 |
cat |
166 |
Q |
| |
|
||| |
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|
| T |
36732280 |
cat |
36732278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 23885073 - 23885000
Alignment:
| Q |
107 |
atatacttccttatccttcttcttctgtgaagaat---ttggaatattttccattttcttcatctcagtcttct |
177 |
Q |
| |
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|||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
23885073 |
atattcttccttatccttcttcatctgagaagaataatttggaatattttccattttcttcacttcagtcttct |
23885000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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