View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8792_low_2 (Length: 368)
Name: NF8792_low_2
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8792_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 45568187 - 45567856
Alignment:
| Q |
1 |
atttagttttaatttgttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagt |
100 |
Q |
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| T |
45568187 |
atttagttttaattagttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagt |
45568088 |
T |
|
| Q |
101 |
gttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagnnnnnnnnncctcgtgtcttaattggttaattaacaggtctt |
200 |
Q |
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| T |
45568087 |
gttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagtttttttttcctcgtgtcttaattggttaattaacaggtctt |
45567988 |
T |
|
| Q |
201 |
aaattgtcttaacggaccagttatctcatatctgaaaagggtagatgagaatttaaagaatattggtcattacagacactacgtttgaatcctgatgagg |
300 |
Q |
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| T |
45567987 |
aaattgtcttaacggaccagttatctcat---------------------atttaaagaatattggtcattacagacacaacgtttgaatcctgatgagg |
45567909 |
T |
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| Q |
301 |
acaatatcagaggttctattgcctgtcttagagctagggatgtttcaaggaag |
353 |
Q |
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| T |
45567908 |
acaatatcagaggttctattgcctgtcttagagctagggatgtttcaaggaag |
45567856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 353
Target Start/End: Original strand, 35817131 - 35817443
Alignment:
| Q |
39 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaat |
138 |
Q |
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| T |
35817131 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggatgatagtgttaatttaatcgatgagaaattatttgaaaagcaaat |
35817230 |
T |
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| Q |
139 |
ggaccgctgagaagatgcagnnnnnnnnn-cctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaa |
237 |
Q |
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| T |
35817231 |
ggaccactgggaagatgcaggtttttttttcctcgtgtcttaaatggtta-ttaacaggtcttaaattgtctcaatggaccagttatctcat--ctgaaa |
35817327 |
T |
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| Q |
238 |
agggtagatgagaatttaaagaatattggtcattacagacactacgtttgaatcctgatgaggacaatatcagaggttctattgcctgtcttagagctag |
337 |
Q |
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| T |
35817328 |
agggtagatgagaaattatagaatattggtcattatagacactacatttgaatactgacgaggacaatatcagaggttttattgcttgtcttagagctag |
35817427 |
T |
|
| Q |
338 |
ggatgtttcaaggaag |
353 |
Q |
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| T |
35817428 |
ggatgtttcgaggaag |
35817443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 51 - 353
Target Start/End: Complemental strand, 45093218 - 45092926
Alignment:
| Q |
51 |
gatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgaga |
150 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||| | |||||| ||||||||||||| |||||| ||||| |
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| T |
45093218 |
gatacttgccacaatttttcactatccctatttgagtcttggatgatag-gttaatctaatcattgagaaataatttgaaaagcaactggaccattgaga |
45093120 |
T |
|
| Q |
151 |
agatgcagnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaaagggtagatgaga |
250 |
Q |
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| ||||| |||||||| |||| |||||||||||||||||||||| || || |||| |||||||||| |||||||||||||||| |
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| T |
45093119 |
aaatgca-agtttttttcctcgtgtattaaatggttaattaacaggtcttaaaatg--------gaagagttctctcatatctcaaaagggtagatgaga |
45093029 |
T |
|
| Q |
251 |
atttaaagaatattggtcattacagacactacgtttgaatcctgatgaggacaatatcagaggttctattgcctgtcttagagctagggatgtttcaagg |
350 |
Q |
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| T |
45093028 |
atttaaagaattttgatcgttgtagacactacatttgaatctcgatgaggacaatattaaaggctctattgcctgtcttggagctaagtatgtttcgagg |
45092929 |
T |
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