View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8792_low_4 (Length: 357)

Name: NF8792_low_4
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8792_low_4
NF8792_low_4
[»] chr1 (4 HSPs)
chr1 (19-348)||(33931464-33931793)
chr1 (105-300)||(6770862-6771055)
chr1 (105-348)||(5171104-5171345)
chr1 (217-323)||(39989270-39989374)
[»] chr6 (4 HSPs)
chr6 (105-348)||(7022664-7022905)
chr6 (105-348)||(34252152-34252395)
chr6 (105-316)||(26292296-26292505)
chr6 (146-317)||(10570535-10570704)
[»] chr8 (2 HSPs)
chr8 (105-348)||(15917233-15917474)
chr8 (133-323)||(8567610-8567798)
[»] chr7 (3 HSPs)
chr7 (105-323)||(5952893-5953109)
chr7 (244-348)||(38024628-38024732)
chr7 (127-254)||(13583408-13583533)
[»] chr3 (3 HSPs)
chr3 (105-345)||(29018593-29018831)
chr3 (105-285)||(55428995-55429174)
chr3 (186-254)||(17065241-17065307)
[»] chr4 (4 HSPs)
chr4 (105-322)||(19816348-19816563)
chr4 (220-322)||(1804489-1804591)
chr4 (105-188)||(21374969-21375052)
chr4 (285-348)||(21375056-21375119)
[»] chr5 (3 HSPs)
chr5 (105-272)||(35946809-35946974)
chr5 (107-346)||(28175138-28175367)
chr5 (217-271)||(6642297-6642351)
[»] chr2 (3 HSPs)
chr2 (226-348)||(9992903-9993025)
chr2 (104-260)||(29763131-29763285)
chr2 (236-323)||(9388876-9388963)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 33931793 - 33931464
Alignment:
Q  19 agaagggcccttctttgttctcatacagaatattagggatttcaaaaattgaagtgatacttttatgtggatatagattaaatcattattacttcttgtt 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33931793 agaagggcccttctttgttctcatacagaattttagggatttcaaaaattgaagtgatacttttatgtggatatagattaaataattattacttcttgtt 33931694  T
Q  119 tgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattttaggatgactctttt 218  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33931693 tgacggccgaattgtatgccattttttatggtcttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattttaggatgactctttt 33931594  T
Q  219 gatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttcatc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33931593 gatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcaacatcgagattagattttttattttcatc 33931494  T
Q  319 ataccatacatcaaggctacgtgtgtgcgg 348  Q
    ||||| | ||||||||| ||| ||||||||    
T  33931493 ataccctccatcaaggcaacgagtgtgcgg 33931464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 105 - 300
Target Start/End: Original strand, 6770862 - 6771055
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||| |    
T  6770862 tattacttcttgcttggcggccgaattgtatgccattttttatggtcttcatattgcgtatgatgcgggtcacatgaacattattcttgaatcaaattat 6770961  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagatt 300  Q
    |||||| |||  ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||  |||| |||||||||| ||||||||||    
T  6770962 aggatggctc--ttgatttaatcatgtcgaatgtcgaatctcatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagatt 6771055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 105 - 348
Target Start/End: Original strand, 5171104 - 5171345
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||  ||| |||||||||| |||||||||||| |||||||| |||||||||||||||||||  |||  ||||||||| |||| ||||||| |    
T  5171104 tattacttcttacttggcggccgaattgtatgccatttttcatggcctttgtattgcgtatgatgcgggctacaaaaacattattcttgagtcagattct 5171203  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagat 304  Q
    |||||| |||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||| |||||||||| ||||||||||  ||    
T  5171204 aggatggctctt--gatttaatcatgtcggatgtccaatctcatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagattgaat 5171301  T
Q  305 tttttattttcatcataccatacatcaaggctacgtgtgtgcgg 348  Q
    | || |||||||| ||||| | | ||||||| ||| ||||||||    
T  5171302 tgttaattttcattataccctccgtcaaggcaacgagtgtgcgg 5171345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 39989270 - 39989374
Alignment:
Q  217 ttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttca 316  Q
    ||||| ||||||||| ||||  | |||||||||||||| ||||||||||||| |||| || | || ||||||| |||||||||| |||| || |||||||    
T  39989270 ttgatctaatcatgttggat--caaacctcatcatccttatgcttctctgataagttagaatgtctaactgcatcatcgagattggattgttaattttca 39989367  T
Q  317 tcatacc 323  Q
    |||||||    
T  39989368 tcatacc 39989374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 105 - 348
Target Start/End: Original strand, 7022664 - 7022905
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||| ||| |||||||||| |||| ||||||| ||||||||||||||||||||| ||||||  |||||||||||||| |||| ||||||| |    
T  7022664 tattacttcttgcttggcggccgaattgtatgtcatttttcatggccttcgtattgcgtatggtgcgggctacatgaacattattcttgagtcagattct 7022763  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagat 304  Q
    |||||| |||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||| |||||||||| |||||||||| |||    
T  7022764 aggatggctctt--gatttaatcatgtcggatgtccaatctcatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagattggat 7022861  T
Q  305 tttttattttcatcataccatacatcaaggctacgtgtgtgcgg 348  Q
    | || |||||||||||||| | | ||||||| ||| ||||||||    
T  7022862 tgttaattttcatcataccctccgtcaaggcaacgagtgtgcgg 7022905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 105 - 348
Target Start/End: Original strand, 34252152 - 34252395
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||| |||||||||| ||  ||| |||||||||| |||| | ||||| |    
T  34252152 tattacttcttgcttggcggccgaattgtatgccatttttcatggccttcgtattacgtatgatgcaggctacaagaacattattcttgagtgagattct 34252251  T
Q  205 aggatgactcttttgatttaatcatgtc--ggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattag 302  Q
    |||||| |||||  ||||||||||||||  |||||||||| || |||||||||||||| |||||||||||  |||| |||||||||| |||||||||| |    
T  34252252 aggatggctctt--gatttaatcatgtctcggatgtccaatcttatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagattgg 34252349  T
Q  303 attttttattttcatcataccatacatcaaggctacgtgtgtgcgg 348  Q
    ||| || |||||||||||||| | | ||||||| ||| ||||||||    
T  34252350 attgttaattttcatcataccctccgtcaaggcaacgggtgtgcgg 34252395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 26292505 - 26292296
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||| |||||||||||| |    
T  26292505 tattacttcttgcttggcggccgaattgtatgccatttttcatggccttcgtattgcgtatgatgcaggctacatgaacattattcttgaatcagattct 26292406  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagat 304  Q
    |||| | |||  ||||||||| |||||||  ||||||| ||| ||||||||||||| |||||||||||  |||| ||||| |||| |||||| ||| |||    
T  26292405 aggagggctc--ttgatttaaacatgtcgagtgtccaatctcgtcatcctcatgctcctctgattagtcggattttccaattgcaacatcgatattggat 26292308  T
Q  305 tttttattttca 316  Q
    | || |||||||    
T  26292307 tgttaattttca 26292296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 317
Target Start/End: Original strand, 10570535 - 10570704
Alignment:
Q  146 atggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattttaggatgactcttttgatttaatcatgtcggatgtccaacct 245  Q
    |||| ||||||||||||||||||||||| ||  ||||||||||| |||||||||||| ||||||| |||  || ||||||| ||||||||| ||||||||    
T  10570535 atggtcttcgtattgcgtatgatgcgggccatgtgaacattattcttgaatcagattctaggatggctc--ttaatttaattatgtcggatatccaacct 10570632  T
Q  246 catcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttcat 317  Q
    | ||||| || || | |||| ||||||  |||  | |||||||| |||||||||| |||| || ||||||||    
T  10570633 cgtcatcatcgtgttcctcttattagtcagatagttcaactgcaacatcgagattggattgttaattttcat 10570704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 105 - 348
Target Start/End: Complemental strand, 15917474 - 15917233
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||| ||| ||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  15917474 tattacttcttgcttggcggccaaattgtatgtcatttttcatggccttcgtattgcgtatgatgcgggtcacaagaacattattcttgaatcagatttt 15917375  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagat 304  Q
    |||||| |||  |||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||  |||| |||||||||| ||||||||||  ||    
T  15917374 aggatggctc--ttgatttaatcatgtcggatgtccaatctcatcatccccatgctcctctaattagtcagattgtccaactgcaacatcgagattgcat 15917277  T
Q  305 tttttattttcatcataccatacatcaaggctacgtgtgtgcgg 348  Q
    | || |||||||||||||| | | ||||||  ||| ||||||||    
T  15917276 tgttaattttcatcataccctccgtcaaggtaacgcgtgtgcgg 15917233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 133 - 323
Target Start/End: Complemental strand, 8567798 - 8567610
Alignment:
Q  133 tatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattttaggatgactcttttgatttaatcatgtc 232  Q
    |||| ||||||| | |||||||||||||||||||||||||||||   |||||||||| |||||||||||| || | ||   |||||||| ||||||||||    
T  8567798 tatgtcatttttcacggccttcgtattgcgtatgatgcgggtcaagggaacattattcttgaatcagattctatggtg--gcttttgatctaatcatgtc 8567701  T
Q  233 ggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttcatcatacc 323  Q
    ||||||| |||||||||||| ||||||| || ||||||||  |||| |||||||| | ||||||||||  ||| || ||||||||||||||    
T  8567700 ggatgtcgaacctcatcatcttcatgctcctttgattagtcagattgtccaactgtaacatcgagattgaattattaattttcatcatacc 8567610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 105 - 323
Target Start/End: Complemental strand, 5953109 - 5952893
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||||||| | |||||||| |||| ||||||| ||||||||||| |||||||||||||||| |||  |||||||||| |||||||||||| |    
T  5953109 tattacttcttgtttggcagccgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacgggaacattattcttgaatcagattct 5953010  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagat 304  Q
    |||||| | |||  |||||||||||||||||||||||| ||||||||||||||||| || ||||||||  |||| |||||||||| |||||||||| |||    
T  5953009 aggatggccctt--gatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggat 5952912  T
Q  305 tttttattttcatcatacc 323  Q
    | || ||||||| ||||||    
T  5952911 tgttcattttcagcatacc 5952893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 38024628 - 38024732
Alignment:
Q  244 ctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttcatcataccatacatcaaggctacgtgtg 343  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||| |||||||||| |||| || |||||||||||||| | | ||||||| ||| |||    
T  38024628 ctcatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagattggattgttaattttcatcataccctccgtcaaggcaacgagtg 38024727  T
Q  344 tgcgg 348  Q
    |||||    
T  38024728 tgcgg 38024732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 13583408 - 13583533
Alignment:
Q  127 gaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattttaggatgactcttttgatttaat 226  Q
    ||||| |||||||  ||| || ||||||||||||| |||||||  || |||| || ||||||| ||||||| |||| |||| || ||| ||  || ||||    
T  13583408 gaattgtatgccacctttcatagccttcgtattgcatatgatgttggacacaagagcattattcttgaatctgattctagggtggctcatt--atctaat 13583505  T
Q  227 catgtcggatgtccaacctcatcatcct 254  Q
    ||||| |||||| ||||||| |||||||    
T  13583506 catgttggatgttcaacctcgtcatcct 13583533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 105 - 345
Target Start/End: Complemental strand, 29018831 - 29018593
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||| ||| | ||| |||| |||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||| |    
T  29018831 tattacttcttgcttggctgccaaattgtatgccatttttcatggccttcgtattgtgtgtgatgcgggtcacatgaacattattcttgaattagattct 29018732  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagat 304  Q
    | | ||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||||| || |||||||||| |||    
T  29018731 aaggtgactctt--gatctaatcatgtcggatgtccaacctcatcatcctcatgctcctctgattagtcagattgtccaactacaacatcgagattggat 29018634  T
Q  305 tttttattttcatcataccatacatcaaggctacgtgtgtg 345  Q
    | |  ||||||| ||| |||| | ||||||| ||| |||||    
T  29018633 tgtcaattttcaacattccatccgtcaaggcaacgagtgtg 29018593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 285
Target Start/End: Complemental strand, 55429174 - 55428995
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccatttttt-atggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattt 203  Q
    ||||||||| || ||| | || ||||| ||||||||||||  | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||     
T  55429174 tattacttcctgcttggcagctgaattgtatgccatttttgcacggccttcgtattgcgtatgatgcgggccacatgaacattattcttgaatcagattc 55429075  T
Q  204 taggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaac 285  Q
     ||||||   || ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||  |||| ||||||    
T  55429074 caggatg--gctattgatttaatcatgtcggatgtcgaatctcatcatcctcatgctcctctgattagtcagattgtccaac 55428995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 17065307 - 17065241
Alignment:
Q  186 tatttttgaatcagattttaggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcct 254  Q
    |||| ||||||| |||| |||| ||||||||  |||||||| |||||| || |||||||||||||||||    
T  17065307 tattcttgaatccgattctagggtgactctt--gatttaattatgtcgaatttccaacctcatcatcct 17065241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 105 - 322
Target Start/End: Complemental strand, 19816563 - 19816348
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||| ||| |||| ||||| ||||| |||||| |||||||||||||||| ||||||||||| || |||| ||||||| |||||||||||| |    
T  19816563 tattacttcttgcttggcggctgaattgtatgctatttttcatggccttcgtattgcatatgatgcgggccatatgagcattattcttgaatcagattct 19816464  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagat 304  Q
    |||||| |||  ||||||||||||||||||||||  || ||||||||||||||||| | |||||||||  |||| |||||||||| |||| ||||| |||    
T  19816463 aggatggctc--ttgatttaatcatgtcggatgttgaatctcatcatcctcatgctcccctgattagtcagattgtccaactgcaacatcaagattggat 19816366  T
Q  305 tttttattttcatcatac 322  Q
    | || |||||||||||||    
T  19816365 tgttcattttcatcatac 19816348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 1804489 - 1804591
Alignment:
Q  220 atttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttcatca 319  Q
    ||||||| ||||||||||||||| ||||||||| |||||||  ||||||||||| |||| |||| ||||| |||||| ||| |||| || ||||||||||    
T  1804489 atttaattatgtcggatgtccaagctcatcatcttcatgctcttctgattagttagattgtccacctgcaacatcgatattggattgttaattttcatca 1804588  T
Q  320 tac 322  Q
    |||    
T  1804589 tac 1804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 21374969 - 21375052
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattat 188  Q
    |||||||||||  ||||||| | |||| |||||||||||| || ||||||||||||| ||| ||||||| |||| |||||||||    
T  21374969 tattacttctttcttgacggacaaattgtatgccatttttcattgccttcgtattgcatataatgcgggccacaggaacattat 21375052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 21375056 - 21375119
Alignment:
Q  285 ctgcagcatcgagattagattttttattttcatcataccatacatcaaggctacgtgtgtgcgg 348  Q
    ||||| ||||||||||||||| || |||||||||||||| | ||||||||| ||| ||||||||    
T  21375056 ctgcaacatcgagattagattgttaattttcatcataccttccatcaaggcaacgagtgtgcgg 21375119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 272
Target Start/End: Complemental strand, 35946974 - 35946809
Alignment:
Q  105 tattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt 204  Q
    |||||||||||||||||||||||||||  ||| ||||||| | | |||| ||||||||||||||||||| ||||||||||||||| |||||||| ||| |    
T  35946974 tattacttcttgtttgacggccgaattgcatgtcatttttcaagacctttgtattgcgtatgatgcgggacacatgaacattattcttgaatcatattct 35946875  T
Q  205 aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagt 272  Q
     |||||||||  ||||| ||||||||| ||||| ||||| |||||||||  ||||| || ||||||||    
T  35946874 tggatgactc--ttgatctaatcatgttggatgcccaacatcatcatccatatgctcctttgattagt 35946809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 346
Target Start/End: Original strand, 28175138 - 28175367
Alignment:
Q  107 ttacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattttag 206  Q
    ||||| |||| ||||||| | ||||||||||||||||| ||| ||||||| ||| ||||||||| ||  | |||||||||||| |||||||        |    
T  28175138 ttactacttgcttgacggtcaaattatatgccatttttcatgaccttcgtcttgtgtatgatgcagggaatatgaacattattcttgaatc--------g 28175229  T
Q  207 gatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattt 306  Q
    | || |||||  ||| ||||| |||||||||| ||||||||||||  ||||||| |||| ||||||  |||| ||||| | || |||||||||| || |     
T  28175230 ggtggctctt--gatctaatcttgtcggatgttcaacctcatcattttcatgctcctcttattagtaagattgtccaattacaacatcgagattggaatg 28175327  T
Q  307 tttattttcatcataccatacatcaaggctacgtgtgtgc 346  Q
    || |||||||||||||| | | ||||||| ||| ||||||    
T  28175328 ttaattttcatcataccctccgtcaaggcaacgagtgtgc 28175367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 6642297 - 6642351
Alignment:
Q  217 ttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattag 271  Q
    ||||||||||||||| |||||||||||||||| ||||| || || || |||||||    
T  6642297 ttgatttaatcatgttggatgtccaacctcattatccttattctcctgtgattag 6642351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 348
Target Start/End: Complemental strand, 9993025 - 9992903
Alignment:
Q  226 tcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttcatcataccat 325  Q
    ||||||||||||||||| || |||||||||||||| || ||||||||   ||| |||||||||| | |||||||| |||| || |||||||||||||| |    
T  9993025 tcatgtcggatgtccaatcttatcatcctcatgctcctttgattagtcaaattgtccaactgcatcgtcgagattggattgttaattttcatcataccct 9992926  T
Q  326 acatcaaggctacgtgtgtgcgg 348  Q
     | ||||||| ||| ||||||||    
T  9992925 tcgtcaaggcaacgagtgtgcgg 9992903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 29763131 - 29763285
Alignment:
Q  104 ttattacttcttgtttgacggccgaattatatgccattttttatggccttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagattt 203  Q
    ||||||||||||| ||  || | |||||||||| ||||||| ||| |||||||||| ||||||||| ||| |||| |||||||||| ||||||  |||      
T  29763131 ttattacttcttgcttagcgacagaattatatgtcatttttcatgaccttcgtattacgtatgatgtggggcacaagaacattattcttgaatttgatac 29763230  T
Q  204 taggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgct 260  Q
    |||| || |||  |||||||||||| ||| |||||||||| | |||||||| |||||    
T  29763231 tagggtggctc--ttgatttaatcacgtcagatgtccaactttatcatccttatgct 29763285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 9388963 - 9388876
Alignment:
Q  236 tgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcagcatcgagattagattttttattttcatcatacc 323  Q
    |||||||  |||||||||| ||||| |||| ||||||  |||| |||||||||| |||||||||| |||| || ||||||||||||||    
T  9388963 tgtccaatatcatcatcctgatgctcctcttattagtcagattgtccaactgcaacatcgagattggattgttaattttcatcatacc 9388876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University