View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8792_low_6 (Length: 331)
Name: NF8792_low_6
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8792_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 33902891 - 33903203
Alignment:
| Q |
1 |
gaaatctataatgctagatccaagaaagttataaagtnnnnnnnnctaggcaagaaagcatgcaggtacttttaattgggaaaacttacttagctggtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33902891 |
gaaatctataatgctagatccaagaaagttataaaataaaaaaaactaggcaagaaagcatgcaggtacttttaattggggaaacttacttagctggtgg |
33902990 |
T |
|
| Q |
101 |
cttagcagggtccttaaggagggtcttctcctttgaagcactcttctcattcagatcttccttggtttgaagattaagtttcagatcaactgtctcagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33902991 |
cttagcagggtccttaaggagggtcttctcctttgaagcactcttctcattcagatcttccttggtttgaagattaagcttcagatcaactgtctcagag |
33903090 |
T |
|
| Q |
201 |
aaacctctctttgcagaagcccttggagtttccacctcagagccacctccaccgccgccaccgccaccaccaggcagaccaagacaaagctcagtctcct |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
33903091 |
aaacctctctttccagaagcccttggagtttccacctcagagccacctccaccgccgccgccgccaccaccaggcagacccagacaaagctcagtctcct |
33903190 |
T |
|
| Q |
301 |
tcaggttcaaacc |
313 |
Q |
| |
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||||||||||||| |
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| T |
33903191 |
tcaggttcaaacc |
33903203 |
T |
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