View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_high_12 (Length: 405)
Name: NF8793_high_12
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 47585422 - 47585798
Alignment:
| Q |
1 |
gccgggaaagtttgatattgctggccatagtcaccaactttttcatgtcttggttgtggcgggggcatatacacattaccgtgatgggttaatttacctt |
100 |
Q |
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| T |
47585422 |
gccgggaaagtttgatattgctggccatagtcaccaactttttcatgtcttggttgtggcgggggcatatacacattaccgtgatgggttaatttacctt |
47585521 |
T |
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| Q |
101 |
agatggagagatttgaaaggctgttaattaggccggtagggagtctgttgtaggtactttggctttctttttgttgttcaaaacttagagatattggatg |
200 |
Q |
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| T |
47585522 |
agatggagagatttgaaaggctgttaattaggccggtagggagtctgttgtaggtactttggctttctttttgttgttcaaaactt--agatattggatg |
47585619 |
T |
|
| Q |
201 |
aaagatgaagaaagtgattgtgtattattgtatagaaaaaagctccatgcttcttttttgtgttagatttatgaatctaaaaacaaagaggtaaatctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585620 |
aaagatgaagaaagtgattgtgtattattgtatagaaaaaagcttcatgcttcttttttgtgttagatttatgaatctaaaaacaaagaggtaaatctaa |
47585719 |
T |
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| Q |
301 |
gagaatacatggattttttgttctatcaaaagtatgtagtatattacatgtaaatccttcaaatattatctttggaacaata |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47585720 |
gagaatacatggattttttgttctatcaaaagtatgtagta---tacatgtaaatccttcaaatattatctttggaacaata |
47585798 |
T |
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