View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8793_high_13 (Length: 402)
Name: NF8793_high_13
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 64 - 386
Target Start/End: Original strand, 5540913 - 5541235
Alignment:
| Q |
64 |
aattaatgtcagatggttacaagtacttacaattgtaggtggaaaagttttgaacctaatttacactatacaattttaaaattagaaaggatgacctgaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
5540913 |
aattaatgtcagatggttacaagtacttacaattgtaggtggaaaagttttgaacctaatttacactatacaattttaaaattagaaaggttgacttgaa |
5541012 |
T |
|
| Q |
164 |
tgcattgtctactcaaaatatcgacgaatatttttaannnnnnnnnncgtgaggaatcaatatcaatataataaattaagagagaataaatttcaaggtt |
263 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5541013 |
tgcattgtctactcaaagtatcgacgaatatttttaattttttttttcgtgaggaatcaatatcaatataataaattaagagagaataaatttcagggtt |
5541112 |
T |
|
| Q |
264 |
tggtatattgataaataacgcaggtcttggattcatataagtttcaagttttaactcctctaaataatgttattggaggggataattgaaattctccaat |
363 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5541113 |
tggtataatgataaataacgcaggtcttggattcatataagtttcaagttttaactcctctaaataatgttattggaggggataattgaaattctccaat |
5541212 |
T |
|
| Q |
364 |
gttccgagttttaggtctttatt |
386 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
5541213 |
gttcagaattttaggtctttatt |
5541235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 5540861 - 5540893
Alignment:
| Q |
12 |
cagagagagacagggattgcatgtgtaatattg |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5540861 |
cagagagagacagggattgcatgtgtaatattg |
5540893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University