View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_high_17 (Length: 366)
Name: NF8793_high_17
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 3638205 - 3638539
Alignment:
| Q |
18 |
cagatttgaccattatatttgtgtggtatggtagtattccctctggtgtttctgcgttgaaaacaataaaacagctttcaacacagtctgttgtgacagt |
117 |
Q |
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| T |
3638205 |
cagatttgaccattatatttgtgtggtatggtagtattccctctggtgtttctgcgttgaaaacaataaaaaagctttcaacacagtctgttgtgacagt |
3638304 |
T |
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| Q |
118 |
tgcaagtggaaatgtgggagaattaacttattttatgtgttagcagaaaagtgcaccaaatctagcatgacttttgttaaaagaaattgtgaatctatat |
217 |
Q |
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| T |
3638305 |
tgcaagtggaaatgtgggagaattaacttattttatgtgttagcagaaaagtgcaccaaatctagcatgacttttgttaaaagaaattgtgaatctatat |
3638404 |
T |
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| Q |
218 |
t-tccttgctaactaatcattttgtcttcttaaaaagcagattttgtaacttaggaggagtatgtggaaattgttgaagaggacccatcatcttcctaac |
316 |
Q |
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| T |
3638405 |
tctccttgctaactaatcattttgtcttcttaaaaagcagattttgtaacttaggaggagtatgtggaaattgttgaagaggacccatcatcttcctaac |
3638504 |
T |
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| Q |
317 |
caactttacaaatgaaaattggattctctctgtct |
351 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3638505 |
caactttacaaatgaaaattggattctctctgtct |
3638539 |
T |
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