View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_high_18 (Length: 356)
Name: NF8793_high_18
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 27700214 - 27699876
Alignment:
| Q |
1 |
gaaattaaatcgaaagaaaactagaaaatactactctatagcatagaaagttccatttgcatcaaattttaggagatgcaaaagatcattgagaggggag |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
27700214 |
gaaattaaaccgaaagaaaactagaaaatactactctatagcatagaaagttccatttgcatcaaattttaggagatgcaaaagatcttcgagaggggag |
27700115 |
T |
|
| Q |
101 |
catggtaagacaaatttatatctaatgatgctccagacttggctataaagtccacacaatgattttcctctaagagtatgacaaacaacgacattacttt |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27700114 |
catggtaagacaaatttgtatctaatgatgctccagacttggttataaagtccacacaatgattttcctctaagagtatgacaaacaacgacattacttt |
27700015 |
T |
|
| Q |
201 |
gctcagtcgagtcattcactacttgaattaaaa-aacatggacatgaaaccttgtggttagccccttgatgtggttgataccgagtaaagagttggggta |
299 |
Q |
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||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27700014 |
gctcaatcgagtcattcacttcttgaattaaaacaacatggacatgaaacctcgtggttagccccttgatgtggttgataccgagtaaagagttggagta |
27699915 |
T |
|
| Q |
300 |
gcaaatgagctcttcaatgtccaaacttcttgccaatat |
338 |
Q |
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| T |
27699914 |
gcaaatgagctcttcaatgtccaaacttcttgccaatat |
27699876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 24368912 - 24368944
Alignment:
| Q |
168 |
ctctaagagtatgacaaacaacgacattacttt |
200 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
24368912 |
ctctaagagtatgacaaacaatgacattacttt |
24368944 |
T |
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