View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8793_high_22 (Length: 271)

Name: NF8793_high_22
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8793_high_22
NF8793_high_22
[»] chr3 (12 HSPs)
chr3 (54-205)||(52671233-52671384)
chr3 (5-47)||(36992173-36992215)
chr3 (5-47)||(37017613-37017655)
chr3 (218-252)||(52671461-52671495)
chr3 (5-53)||(8327183-8327231)
chr3 (5-47)||(5113204-5113246)
chr3 (5-47)||(20586078-20586120)
chr3 (5-47)||(20586584-20586626)
chr3 (5-47)||(24394253-24394295)
chr3 (5-47)||(26006152-26006194)
chr3 (5-46)||(45000827-45000868)
chr3 (5-53)||(44021286-44021334)
[»] chr5 (13 HSPs)
chr5 (1-53)||(36912246-36912298)
chr5 (1-53)||(17591380-17591431)
chr5 (8-47)||(3596296-3596335)
chr5 (5-47)||(3595783-3595825)
chr5 (5-47)||(7858333-7858375)
chr5 (5-47)||(8320881-8320923)
chr5 (5-47)||(8321387-8321429)
chr5 (5-47)||(12330154-12330196)
chr5 (5-47)||(12330662-12330704)
chr5 (1-59)||(17590559-17590617)
chr5 (5-47)||(31078462-31078504)
chr5 (1-46)||(36912988-36913033)
chr5 (7-47)||(25993570-25993610)
[»] chr4 (11 HSPs)
chr4 (1-56)||(19130397-19130452)
chr4 (1-53)||(3167473-3167525)
chr4 (1-53)||(14472485-14472539)
chr4 (5-53)||(25655638-25655687)
chr4 (5-47)||(5235380-5235422)
chr4 (5-47)||(6934502-6934544)
chr4 (5-47)||(20174976-20175018)
chr4 (1-39)||(32291336-32291374)
chr4 (5-47)||(39413621-39413663)
chr4 (5-54)||(46764251-46764301)
chr4 (1-53)||(19129525-19129577)
[»] chr7 (7 HSPs)
chr7 (1-53)||(14735357-14735409)
chr7 (1-59)||(14736166-14736224)
chr7 (5-47)||(30414187-30414229)
chr7 (8-47)||(25137928-25137967)
chr7 (5-47)||(25137418-25137460)
chr7 (1-47)||(39045234-39045280)
chr7 (5-53)||(33140294-33140342)
[»] chr6 (5 HSPs)
chr6 (5-47)||(7635635-7635677)
chr6 (8-53)||(930923-930969)
chr6 (5-47)||(7635130-7635172)
chr6 (5-47)||(18290495-18290537)
chr6 (1-53)||(25067845-25067898)
[»] scaffold0508 (1 HSPs)
scaffold0508 (5-47)||(4139-4181)
[»] chr8 (1 HSPs)
chr8 (5-47)||(30846022-30846064)
[»] chr2 (6 HSPs)
chr2 (5-47)||(6610043-6610085)
chr2 (5-47)||(7994061-7994103)
chr2 (5-47)||(15561547-15561589)
chr2 (5-47)||(15562040-15562082)
chr2 (5-47)||(16903897-16903939)
chr2 (5-47)||(30899396-30899438)
[»] chr1 (5 HSPs)
chr1 (5-47)||(38328886-38328928)
chr1 (5-47)||(38468912-38468954)
chr1 (5-47)||(43755855-43755897)
chr1 (5-47)||(43756347-43756389)
chr1 (5-53)||(17151002-17151050)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 52671233 - 52671384
Alignment:
Q  54 aataatatgatcatcttcataaacgattagatataaaatatatacatttttgcccaccgcatgtctatggtttgtagttaagagtacatttcttcatact 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52671233 aataatatgatcatcttcataaacgattagatataaaatatatacatttttgcccaccgcatgtctatggtttgtagttaagagtacatttctgcatact 52671332  T
Q  154 cttatatgttgacgtaccgaatgtactcaagccatttccatctctttgtagt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52671333 cttatatgttgacgtaccgaatgtactcaagccatttccatctctttgtagt 52671384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 36992173 - 36992215
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  36992173 aactttcccatggtgggaaaaattagcctttcccatactaaac 36992215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 37017613 - 37017655
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  37017613 aactttcccatggtgggaaaaattagcctttcccatactaaac 37017655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 52671461 - 52671495
Alignment:
Q  218 actacatgaaacaaattgatagtttatgtaaggtc 252  Q
    |||||||||||||||||||||||||||||||||||    
T  52671461 actacatgaaacaaattgatagtttatgtaaggtc 52671495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 8327183 - 8327231
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  8327183 aactttcccatggtggaaaaaattagtctttcccatgctaaactccacc 8327231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 5113246 - 5113204
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  5113246 aactttcccatggtgggaaaaattagcctttcccatgctaaac 5113204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 20586120 - 20586078
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  20586120 aactttcccatggtgggaaaaattagcctttcccatgctaaac 20586078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 20586584 - 20586626
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  20586584 aactttcccatggtgggaaaaattagcctttcccatgctaaac 20586626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 24394295 - 24394253
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  24394295 aactttcctatggtggaaaaaattagtctttcccatactaaac 24394253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 26006194 - 26006152
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  26006194 aactttcccatggtgggaaaaattagcctttcccatgctaaac 26006152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 45000827 - 45000868
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaa 46  Q
    |||||||||||||||||||||| ||| ||||||||| |||||    
T  45000827 aactttcccatggtgggaaaaattagcctttcccattctaaa 45000868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 44021334 - 44021286
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||||||| ||   |||||||||| ||||||||||||    
T  44021334 aactttcccatggtgggaaacaactttctttcccatgctaaaccccacc 44021286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36912298 - 36912246
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  36912298 aaacaactttcccatggtgggaaaaaatagcctttcccatgctaaaccccacc 36912246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17591380 - 17591431
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  17591380 aaacaactttcccatggtgg-aaaaaatagtctttcccatgctaaatcccacc 17591431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 3596296 - 3596335
Alignment:
Q  8 tttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  3596296 tttcccatggtgggaaaaattagtctttcccatgctaaac 3596335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 3595825 - 3595783
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  3595825 aactttcccatggtgggaaaaattagcctttcccatgctaaac 3595783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 7858375 - 7858333
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  7858375 aactttcccatggtgggaaaaattagcctttcccatgctaaac 7858333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 8320923 - 8320881
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  8320923 aactttcccatggtgggaaaaattagcctttcccatgctaaac 8320881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 8321387 - 8321429
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  8321387 aactttcccatggtgggaaaaattagcctttcccatgctaaac 8321429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 12330196 - 12330154
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  12330196 aactttcccatggtgggaaaaattagcctttcccatgctaaac 12330154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 12330662 - 12330704
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  12330662 aactttcccatggtgggaaaaattagcctttcccatgctaaac 12330704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17590617 - 17590559
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccaccaataat 59  Q
    ||||| |||||||||||| ||||||||||||||||| |||  |||||||| || |||||    
T  17590617 aaacatctttcccatggtaggaaaaaatagtctttctcatgttaaaccccgcccataat 17590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 31078504 - 31078462
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||    
T  31078504 aactttcccatggtggaaaaaattagtctttcccatgctaaac 31078462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36912988 - 36913033
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaa 46  Q
    |||||||||| |||||||| ||||||||||  ||||||||||||||    
T  36912988 aaacaacttttccatggtgagaaaaaatagcatttcccatactaaa 36913033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 25993570 - 25993610
Alignment:
Q  7 ctttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  25993570 ctttcccatggtgggaaaaactagcctttcccagactaaac 25993610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19130397 - 19130452
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccaccaat 56  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19130397 aaacaattttcccatgatgggaaaaaatagtctttcccatgctaaaccccaccaat 19130452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3167473 - 3167525
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||||||||    
T  3167473 aaacaactttcccatggtgggaaaaagtaatctttcccatgctaaaccccacc 3167525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14472539 - 14472485
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaa--tagtctttcccatactaaaccccacc 53  Q
    |||||||||| ||||||||||||||||  |||||||||||| |||||||||||||    
T  14472539 aaacaacttttccatggtgggaaaaaaaatagtctttcccagactaaaccccacc 14472485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 25655638 - 25655687
Alignment:
Q  5 aactttcccatggtgggaaaaaa-tagtctttcccatactaaaccccacc 53  Q
    ||||||||||||||||||||||| |||||||||||| | |||||||||||    
T  25655638 aactttcccatggtgggaaaaaactagtctttcccaaattaaaccccacc 25655687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 5235422 - 5235380
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  5235422 aactttcccatggtgggaaaaattagcctttcccatgctaaac 5235380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 6934502 - 6934544
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||    
T  6934502 aactttcccatggtggaaaaaattagtctttcccatgctaaac 6934544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 20175018 - 20174976
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  20175018 aactttcccatggtgggaaaaattagcctttcccatgctaaac 20174976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32291374 - 32291336
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttccca 39  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  32291374 aaacaactttcccatagtgggaaaaaatagcctttccca 32291336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 39413621 - 39413663
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  39413621 aactttcctatggtgggaaaaattagtctttcccattctaaac 39413663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 46764301 - 46764251
Alignment:
Q  5 aactttcccatggtgggaaaaaa-tagtctttcccatactaaaccccacca 54  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||||||||||    
T  46764301 aactttcccatggtgggaaaaaactagtcttttccaaattaaaccccacca 46764251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19129577 - 19129525
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||||||||| ||||||| ||||  ||| |||||| |||||    
T  19129577 aaacaactttcccatggtgggagaaaatagcctttttcatgctaaactccacc 19129525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14735409 - 14735357
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||| ||| ||||||||||||||||||||||||||||| |||||| |||||    
T  14735409 aaacaatttttccatggtgggaaaaaatagtctttcccatgctaaactccacc 14735357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14736166 - 14736224
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccaccaataat 59  Q
    ||||| |||||||||||| ||||||||||| |||||||||  ||||||||||| |||||    
T  14736166 aaacatctttcccatggtaggaaaaaatagcctttcccatgttaaaccccacccataat 14736224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 30414229 - 30414187
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  30414229 aactttcccatggtgggaaaaattagcctttcccatactaaac 30414187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 25137928 - 25137967
Alignment:
Q  8 tttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  25137928 tttcccatggtgggaaaaattagtctttcccatgctaaac 25137967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 25137460 - 25137418
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  25137460 aactttcccatggtgggaaaaattagcctttcccatgctaaac 25137418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39045234 - 39045280
Alignment:
Q  1 aaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  39045234 aaacaacttttccatggtgggaaaaagtagcctttcccatgctaaac 39045280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 33140294 - 33140342
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||||||||||    ||||||||||||||||| ||||    
T  33140294 aactttcccatggtgggaaaaaagtaactttcccatactaaacctcacc 33140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 7635635 - 7635677
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  7635635 aactttcccatggtgggaaaaattagtctttcccatgctaaac 7635677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 930969 - 930923
Alignment:
Q  8 tttcccatggtgggaaaaaa-tagtctttcccatactaaaccccacc 53  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||    
T  930969 tttcccatggtgggaaaaaactagtctttcccaaattaaaccccacc 930923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 7635172 - 7635130
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  7635172 aactttcccatggtgggaaaaattagcctttcccatgctaaac 7635130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 18290495 - 18290537
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  18290495 aactttcccatggtgggaaaaattagcctttcccatgctaaac 18290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25067845 - 25067898
Alignment:
Q  1 aaacaactttcccatggtgggaaa-aaatagtctttcccatactaaaccccacc 53  Q
    |||||||||||| ||||||||||| |||||  ||||||||| ||||||||||||    
T  25067845 aaacaactttcctatggtgggaaacaaatatcctttcccatgctaaaccccacc 25067898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 4181 - 4139
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  4181 aactttcccatggtgggaaaaattagcctttcccatgctaaac 4139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 30846064 - 30846022
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  30846064 aactttcctatggtgggaaaaattagtctttcccatgctaaac 30846022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 6610043 - 6610085
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  6610043 aactttcccatggtgggaaaaattagcctttcccatgctaaac 6610085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 7994103 - 7994061
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||    
T  7994103 aactttcccatgatgggaaaaattagcctttcccatactaaac 7994061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 15561589 - 15561547
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  15561589 aactttccaatggtgggaaaaattagtctttcccatgctaaac 15561547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 15562040 - 15562082
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  15562040 aactttcccatggtgggaaaaattagcctttcccatgctaaac 15562082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 16903897 - 16903939
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  16903897 aactttcccatggtgggaaaaattagcctttcccatgctaaac 16903939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 30899438 - 30899396
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  30899438 aactttcccatggtgggaaaaattagcctttcccatgctaaac 30899396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 38328886 - 38328928
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||    
T  38328886 aactttcccatgatgggaaaaattagtctttcccatgctaaac 38328928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 38468954 - 38468912
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  38468954 aactttcccatggtgggaaaaattagcctttcccatgctaaac 38468912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 43755897 - 43755855
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  43755897 aactttcccatggtgggaaaaattagcctttcccatgctaaac 43755855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 43756347 - 43756389
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaac 47  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||    
T  43756347 aactttcccatggtggaaaaaattagtctttcccatgctaaac 43756389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 17151050 - 17151002
Alignment:
Q  5 aactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 53  Q
    ||||||||||||||||||||||  || ||||||||| ||||||| ||||    
T  17151050 aactttcccatggtgggaaaaaccagcctttcccatgctaaacctcacc 17151002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University