View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8793_high_27 (Length: 233)

Name: NF8793_high_27
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8793_high_27
NF8793_high_27
[»] chr5 (3 HSPs)
chr5 (13-106)||(13654005-13654098)
chr5 (156-218)||(13653941-13654003)
chr5 (34-124)||(19100536-19100627)
[»] chr4 (1 HSPs)
chr4 (15-104)||(49072644-49072733)
[»] chr3 (1 HSPs)
chr3 (34-134)||(23799827-23799928)
[»] chr8 (2 HSPs)
chr8 (15-59)||(17693510-17693554)
chr8 (98-180)||(10331118-10331200)
[»] chr2 (1 HSPs)
chr2 (15-135)||(16484584-16484704)
[»] chr7 (2 HSPs)
chr7 (93-171)||(24069371-24069449)
chr7 (112-192)||(5348588-5348668)
[»] scaffold0136 (1 HSPs)
scaffold0136 (22-105)||(34668-34751)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 13654098 - 13654005
Alignment:
Q  13 acttaataccatacaacaacaaaaatgtccacaaataatatgataaatcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgt 106  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13654098 acttaatatcatgcaacaacaaaaatgttcacaaataatatgataaatcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgt 13654005  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 13654003 - 13653941
Alignment:
Q  156 gaactaaatgaacacctcaataagacagtaaatcaaatatgaccacacgcagacgacgaacac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13654003 gaactaaatgaacacctcaataagacagtaaatcaaatatgaccacacacagacgacggacac 13653941  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 19100536 - 19100627
Alignment:
Q  34 aaaatgtccacaaataatatgataaa-tcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgttgaagtcattgattgaat 124  Q
    |||||||| ||||||||||||||||| | ||||||| ||||||| |||||||||||||| || |||||||| ||| || |||||||||||||    
T  19100536 aaaatgtctacaaataatatgataaaattaaagtgactggaatactcatgtcttaagatctggaacgttgatgttcaaatcattgattgaat 19100627  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 49072644 - 49072733
Alignment:
Q  15 ttaataccatacaacaacaaaaatgtccacaaataatatgataaa-tcaaagtgattggaatattcatgtcttaagatatgcaacgttgac 104  Q
    |||||| |||||||||| |||| |||| |||||||||| |||||| | ||||||||||||||||| |||||| | ||||||||||||||||    
T  49072644 ttaatagcatacaacaataaaa-tgtctacaaataatacgataaaatgaaagtgattggaatatttatgtctcaggatatgcaacgttgac 49072733  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 23799827 - 23799928
Alignment:
Q  34 aaaatgtccacaaataatatgataaa-tcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgttgaagtcattgattgaatctgcaatt 132  Q
    |||||| | ||||||||||||||||| || |||| |||| |||| |||||| ||  ||| |||||||||||||  ||| ||||||||||||| || ||||    
T  23799827 aaaatgcctacaaataatatgataaaatctaagtcattgaaatactcatgttttcggatctgcaacgttgacgccgaaatcattgattgaatttgtaatt 23799926  T
Q  133 ga 134  Q
    ||    
T  23799927 ga 23799928  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 17693510 - 17693554
Alignment:
Q  15 ttaataccatacaacaacaaaaatgtccacaaataatatgataaa 59  Q
    |||||| |||||||||||||||||| | |||||||||||||||||    
T  17693510 ttaataacatacaacaacaaaaatgcctacaaataatatgataaa 17693554  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 10331200 - 10331118
Alignment:
Q  98 cgttgacgttgaagtcattgattgaatctgcaattgatcgagactgacatttcaatttgaactaaatgaacacctcaataaga 180  Q
    |||||||||| || | |||||||||||||   ||||||| | ||| | |||||||| ||||| ||||||||||| ||||||||    
T  10331200 cgttgacgttcaaattattgattgaatctttgattgatcaaaactaatatttcaatatgaaccaaatgaacaccacaataaga 10331118  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 16484584 - 16484704
Alignment:
Q  15 ttaataccatacaacaacaaaaatgtccacaaataatatgataaatcaaagtgattggaatattcatgtcttaagatatgcaacgttgacgttgaagtca 114  Q
    |||||| |||||||||| ||||| ||| ||||||||||| |||||   ||||||||| |  | | |||||| ||||| |||| ||||||| |  ||||||    
T  16484584 ttaatagcatacaacaaaaaaaaagtctacaaataatataataaaagcaagtgattgaatgacttatgtctcaagatctgcagcgttgacatcaaagtca 16484683  T
Q  115 ttgattgaatctgcaattgat 135  Q
    || ||||||| || |||||||    
T  16484684 ttaattgaatttgtaattgat 16484704  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 24069371 - 24069449
Alignment:
Q  93 tgcaacgttgacgttgaagtcattgattgaatctgcaattgatcgagactgacatttcaatttgaactaaatgaacacc 171  Q
    ||||||||||||||| || |||||||||||| |||  |||||||||  |||| |||||||| ||||  ||| |||||||    
T  24069371 tgcaacgttgacgttcaaatcattgattgaacctgtgattgatcgaagctgatatttcaatatgaatcaaacgaacacc 24069449  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 5348588 - 5348668
Alignment:
Q  112 tcattgattgaatctgcaattgatcgagactgacatttcaatttgaactaaatgaacacctcaataagacagtaaatcaaa 192  Q
    |||||||||||||||| ||||||| || | |||  |||||||  |||| ||| ||||||| |||||||||  |||||||||    
T  5348588 tcattgattgaatctgtaattgattgaaattgatctttcaataggaaccaaacgaacaccgcaataagacgataaatcaaa 5348668  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 34668 - 34751
Alignment:
Q  22 catacaacaacaaaaatgtccacaaataatatgat-aaatcaaagtgattggaatattcatgtcttaagatatgcaacgttgacg 105  Q
    ||||||||||||||| || | |||||||||||||| |||| ||||||| ||||| | ||||||||   ||| |||||||||||||    
T  34668 catacaacaacaaaa-tgcctacaaataatatgataaaattaaagtgactggaaaactcatgtctccggatttgcaacgttgacg 34751  T

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