View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_high_4 (Length: 549)
Name: NF8793_high_4
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 223 - 534
Target Start/End: Complemental strand, 16791449 - 16791133
Alignment:
| Q |
223 |
ttccaaaaaggggtttacatttacgtctatacgtacttgtaaagcaataaattaaacaaatgcatgcacgttatactttttt-gaataaaaccaagttca |
321 |
Q |
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| T |
16791449 |
ttccaaaaaggggtttacatttacgtctatacgtacttctaaagcaataaattaaacaaatgcatgcacgttatactttttttgaataaaaccaagttca |
16791350 |
T |
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| Q |
322 |
cttaaattattttgttaattggtggtagggcaattgcattgattcgacacggtccctgctgcagcagtatccagaagtgaagtgaacaagttgaaggaag |
421 |
Q |
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| T |
16791349 |
cttaatttattttgttaattggtggtagggcaattgcattgattcgacacggtccctgctgcagcagtatccagaagtgaagtgaacaagttgaaggaag |
16791250 |
T |
|
| Q |
422 |
atcagtataatttggtatttaa----gcaacttaggttcaaaaccagttgatagcaacactcaaaccaccccactatgattgtatataaaattccaaacg |
517 |
Q |
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| T |
16791249 |
atcagtataatttggtatttaattaggcaacttaggttcaaaaccagttgatagcaacactcaaaccaccctgctatgattgtatataaaattccaaacg |
16791150 |
T |
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| Q |
518 |
tcattttccttttttag |
534 |
Q |
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||||||||||||||||| |
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| T |
16791149 |
tcattttccttttttag |
16791133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 16791676 - 16791472
Alignment:
| Q |
19 |
tgctcaaccatccaactgatagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacagggagaaatt |
118 |
Q |
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| T |
16791676 |
tgctcaaccatccaactgatagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacagggagaaatt |
16791577 |
T |
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| Q |
119 |
aatgaacattgaacacttcaaagcacctgaaagaccagtgaatttagtgttgcgaacgattcaatgctttcaagcttgtttgaattgccaagttgaggca |
218 |
Q |
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| T |
16791576 |
aatgaacattgaacacttcaaagcacctgaaagaccggtgaatttagtgttgcgaacgattcaatgctttcaagcttgtttgaattgccaagttgaggca |
16791477 |
T |
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| Q |
219 |
gaatt |
223 |
Q |
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||||| |
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| T |
16791476 |
gaatt |
16791472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 381 - 470
Target Start/End: Complemental strand, 16866115 - 16866026
Alignment:
| Q |
381 |
tgcagcagtatccagaagtgaagtgaacaagttgaaggaagatcagtataatttggtatttaagcaacttaggttcaaaaccagttgata |
470 |
Q |
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| T |
16866115 |
tgcagcagtgtccagaagtgaagtgaacaagttgaaggaagataagtataaataagtatttaagcagcttaggttcaaaattagttgata |
16866026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 17097221 - 17097106
Alignment:
| Q |
38 |
tagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacagggagaaattaatgaacattgaacacttc |
137 |
Q |
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|||||||||||||| ||||| |||||||||| |||||||||||||||| | | ||||| ||| ||||||| ||||||||||||| ||||||||||||| |
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| T |
17097221 |
tagcgactcaaccagccatactcctctctaacaatgcatctggttaaaccagcgtacaaaatatgcatacagagagaaattaatgagcattgaacacttc |
17097122 |
T |
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| Q |
138 |
aaagcacctgaaagac |
153 |
Q |
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||| | ||||||||| |
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| T |
17097121 |
gaagtatctgaaagac |
17097106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 17130830 - 17130909
Alignment:
| Q |
344 |
tggtagggcaattgcattgattcgacacggtccctgctgcagcagtatccagaagtgaagtgaacaagttgaaggaagatca |
425 |
Q |
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||||||| ||||||||||||||||||| |||||||| | ||||| | ||| ||||| |||||||||||||||| |||||| |
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| T |
17130830 |
tggtaggccaattgcattgattcgaca--gtccctgccgaggcagtgttcagcagtgaggtgaacaagttgaaggcagatca |
17130909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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