View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8793_high_6 (Length: 486)

Name: NF8793_high_6
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8793_high_6
NF8793_high_6
[»] chr7 (7 HSPs)
chr7 (15-470)||(38280969-38281429)
chr7 (40-109)||(14622951-14623020)
chr7 (42-109)||(4509959-4510026)
chr7 (42-109)||(4511801-4511868)
chr7 (42-109)||(6430814-6430881)
chr7 (60-114)||(9445107-9445161)
chr7 (227-315)||(23083427-23083515)
[»] chr6 (2 HSPs)
chr6 (239-354)||(10456572-10456688)
chr6 (20-110)||(7325736-7325826)
[»] chr8 (4 HSPs)
chr8 (34-119)||(18198393-18198478)
chr8 (42-109)||(40220755-40220822)
chr8 (242-290)||(10379996-10380044)
chr8 (227-287)||(24570392-24570452)
[»] chr5 (5 HSPs)
chr5 (227-301)||(32584311-32584385)
chr5 (36-120)||(27907500-27907584)
chr5 (32-101)||(16136224-16136293)
chr5 (42-111)||(32608713-32608781)
chr5 (76-111)||(13295052-13295087)
[»] chr2 (8 HSPs)
chr2 (33-114)||(16604654-16604735)
chr2 (6-110)||(27894193-27894296)
chr2 (226-289)||(14877765-14877828)
chr2 (42-105)||(28521652-28521715)
chr2 (227-289)||(16604370-16604432)
chr2 (128-217)||(28861762-28861851)
chr2 (51-111)||(16676813-16676873)
chr2 (79-111)||(28569196-28569228)
[»] chr3 (1 HSPs)
chr3 (42-109)||(43403145-43403212)
[»] chr1 (1 HSPs)
chr1 (42-109)||(19753351-19753418)
[»] chr4 (2 HSPs)
chr4 (76-114)||(54881992-54882030)
chr4 (42-111)||(19222630-19222699)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Complemental strand, 38281429 - 38280969
Alignment:
Q  15 agttttaccattatggggccaccattagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatgtgt 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38281429 agttttaccattatggggccaccattagtctactcctagtcccactagtggaagactcaaactcaagttgagctttctccacctcaacttccaaatgtgt 38281330  T
Q  115 tcatcttatatgtctt-------gtaacctccatctttaaggctgatcatgagagttattatcaccacctctccatattgaacttgagtatttttagcac 207  Q
     |||| ||||||||||       ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  38281329 acatcctatatgtctttcaccttgtaacctccatctttaaggctgatcatgag--ttattatcaccacctctccatattgaacttgagtatttttagcac 38281232  T
Q  208 cgccttttcaggctgatgtcttctacgtaaaggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttcctcattccaacaagacgc 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38281231 cgccttttcagactgatgtcttctacgtaaaggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttcctcatcccaacaagacgc 38281132  T
Q  308 catcaaagcacatgcacatcattatcctctagggcagctgcaaattgcacaaagttatcattgttccctaactcgagacaatccttccttaactgatcgg 407  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38281131 catcaaagcacatgcacatcataatcctctggggcagctgcaaattgcacaaagttatcattgtcccctaactcgagacaatccttccttaactgatcgg 38281032  T
Q  408 tcttgtgacacttgaagcattaataataaaacaaaactaagaaaacacaatgatacttgttca 470  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38281031 tcttgtgacacttgaagcattaataataaaacaagactaagaaaacacaatgatacttgttca 38280969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 14622951 - 14623020
Alignment:
Q  40 tagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaa 109  Q
    |||||| || |||||||||||| || ||||||| | ||||| ||||| ||||||||||||||||||||||    
T  14622951 tagtcttcttctagtcccactaatgtaagactctacctcaaactgagttttctccacctcaacttccaaa 14623020  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 4509959 - 4510026
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaa 109  Q
    |||||||||||||| |||||| | || |||| | |||||| |||| ||||| ||||||||||||||||    
T  4509959 gtctcctcctagtctcactagagaaacactccacctcaagttgagatttctgcacctcaacttccaaa 4510026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 4511801 - 4511868
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaa 109  Q
    |||||||||||||| |||||| | || |||| | |||||| |||| ||||| ||||||||||||||||    
T  4511801 gtctcctcctagtctcactagagaaacactccacctcaagttgagatttctgcacctcaacttccaaa 4511868  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 6430881 - 6430814
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaa 109  Q
    |||||||||||||  | |||| | || ||| || ||||||||||| ||||||||||||||||||||||    
T  6430881 gtctcctcctagtttcgctagagaaacactaaacctcaagctgagatttctccacctcaacttccaaa 6430814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 9445107 - 9445161
Alignment:
Q  60 tagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatgtgt 114  Q
    ||||||||||||| | ||||||||||  || |||||||||||||||||| |||||    
T  9445107 tagtggaagactctacctcaagctgaatttcctccacctcaacttccaattgtgt 9445161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 23083427 - 23083515
Alignment:
Q  227 cttctacgtaaaggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttcctcattccaacaagacgccatcaaag 315  Q
    ||||||| | |||||| | |||||||| || ||||||||||||||||||  || ||||||||  |||| |||| ||||| ||| |||||    
T  23083427 cttctacatgaaggtcgatttgcaagtttcgtcgtttccaaggtgagattatctaccttcttagtcatcccaaaaagacaccaccaaag 23083515  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 10456572 - 10456688
Alignment:
Q  239 ggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttcctcattccaacaagacgccatcaaagcacatgca-catcattatcctct 337  Q
    |||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||  |||||| ||| ||| || |||||||||| | |||| |||||||    
T  10456572 ggtcaacttgcaagtgtcatcgtttccaaggtgagaaacttcaccttcttcatcaccccaacatgacaccaccagagcacatgcatcctcataatcctct 10456671  T
Q  338 agggcagctgcaaattg 354  Q
      |||| ||||||||||    
T  10456672 gaggcaactgcaaattg 10456688  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 7325826 - 7325736
Alignment:
Q  20 taccattatggggccaccattagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaat 110  Q
    ||||||||||| |  |||||| | ||||  |||||||||||| ||||| |||| | |||| | ||||||||||||||| ||||||| ||||    
T  7325826 taccattatggtgttaccatttgcctccatctagtcccactaatggaatactccacctcatgttgagctttctccaccgcaacttctaaat 7325736  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 18198393 - 18198478
Alignment:
Q  34 caccattagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatgtgttcatc 119  Q
    |||||||  ||||||||||||||||||||||||||| || |  ||||| |||| ||||||||||||||||| ||||||||| ||||    
T  18198393 caccatttttctcctcctagtcccactagtggaagaatccacatcaagttgagttttctccacctcaactttcaaatgtgtacatc 18198478  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 40220755 - 40220822
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaa 109  Q
    ||||||||||| || |||||| | || |||| | ||||| ||||| ||||||||||||||||||||||    
T  40220755 gtctcctcctaatctcactagagaaacactccacctcaaactgagatttctccacctcaacttccaaa 40220822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 10379996 - 10380044
Alignment:
Q  242 caaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttcc 290  Q
    ||||||||| ||||| ||||||||||||||| ||||| ||| |||||||    
T  10379996 caaattgcatgtgtcgtcgtttccaaggtgaaatacttcacattcttcc 10380044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 24570452 - 24570392
Alignment:
Q  227 cttctacgtaaaggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttct 287  Q
    ||||||| | |||||||| ||||||||||  | ||||| ||||||||||| ||||||||||    
T  24570452 cttctacatgaaggtcaatttgcaagtgttgttgtttcaaaggtgagatattccaccttct 24570392  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 32584311 - 32584385
Alignment:
Q  227 cttctacgtaaaggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttcctcattccaaca 301  Q
    ||||||| | |||||||| |||||||||| ||| |||||||||||| | ||||||||||||||||| ||||||||    
T  32584311 cttctacatgaaggtcaacttgcaagtgttatcatttccaaggtgaaaaactccaccttcttcctctttccaaca 32584385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 27907584 - 27907500
Alignment:
Q  36 ccattagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatgtgttcatct 120  Q
    ||||| |||||| |||| ||||||||||||||||||| | ||||| | |||  |||| || |||||||||||||||||| |||||    
T  27907584 ccatttgtctccacctattcccactagtggaagactccacctcaaaccgagtcttcttcatctcaacttccaaatgtgtacatct 27907500  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 16136293 - 16136224
Alignment:
Q  32 gccaccattagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaa 101  Q
    ||||||||| |||||| |||||||||  ||||||||||||| | |||||| |||| |||||| |||||||    
T  16136293 gccaccatttgtctccacctagtcccgatagtggaagactccatctcaagatgagatttctctacctcaa 16136224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 32608781 - 32608713
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatg 111  Q
    |||||||||||||||||||| ||||||| |||| ||||||  ||| |||||| | |||||||||||||||    
T  32608781 gtctcctcctagtcccactaatggaagattcaacctcaagacgagttttctcta-ctcaacttccaaatg 32608713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 13295087 - 13295052
Alignment:
Q  76 ctcaagctgagctttctccacctcaacttccaaatg 111  Q
    |||||||||||||||||| |||||||||||||||||    
T  13295087 ctcaagctgagctttctctacctcaacttccaaatg 13295052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 16604735 - 16604654
Alignment:
Q  33 ccaccattagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatgtgt 114  Q
    ||||||||  |||| |||||||||   ||||||||||||| | || ||| ||||||||||||||||||||||||||||||||    
T  16604735 ccaccatttttctcatcctagtcctcgtagtggaagactccacctgaagttgagctttctccacctcaacttccaaatgtgt 16604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 27894296 - 27894193
Alignment:
Q  6 gacatcatcagttttaccattatggggccaccattagtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttc 105  Q
    |||||||| |||| ||||||||||| ||||| |||| ||||| ||||||  || ||||||||||||| | |||||| ||||||||||  | ||||| |||    
T  27894296 gacatcat-agttgtaccattatggtgccacaattactctccacctagtttcattagtggaagactccacctcaagttgagctttctatatctcaaattc 27894198  T
Q  106 caaat 110  Q
    |||||    
T  27894197 caaat 27894193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 14877765 - 14877828
Alignment:
Q  226 tcttctacgtaaaggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttc 289  Q
    |||||||| | |||||||| || |||||||| | ||||||||||||| ||||||||||||||||    
T  14877765 tcttctacatgaaggtcaacttacaagtgtcgttgtttccaaggtgaaatactccaccttcttc 14877828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 28521652 - 28521715
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttc 105  Q
    |||||||||||||||||||||| ||| |||| | ||||||| ||| |||| |||||||||||||    
T  28521652 gtctcctcctagtcccactagtagaatactccacctcaagccgagttttcaccacctcaacttc 28521715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 16604432 - 16604370
Alignment:
Q  227 cttctacgtaaaggtcaaattgcaagtgtcatcgtttccaaggtgagatactccaccttcttc 289  Q
    ||||||| | |||||||| ||||||||||||| |||| |||||| |||||||| |||||||||    
T  16604432 cttctacatgaaggtcaacttgcaagtgtcattgttttcaaggtcagatactcaaccttcttc 16604370  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 28861851 - 28861762
Alignment:
Q  128 cttgtaacctccatctttaaggctgatcatgagagttattatcaccacctctccatattgaacttgagtatttttagcaccgccttttca 217  Q
    ||||||||||||| || |||||| |||||||||  || ||| | ||||||||| | | ||| ||| ||||||||||||||||||| ||||    
T  28861851 cttgtaacctccacctctaaggccgatcatgagttttcttacctccacctctctaaactgacctttagtatttttagcaccgcctcttca 28861762  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 16676873 - 16676813
Alignment:
Q  51 tagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatg 111  Q
    |||||| ||||||||||||||| | |||||| |  | ||||||||||||||||||||||||    
T  16676873 tagtcctactagtggaagactccacctcaagttaggatttctccacctcaacttccaaatg 16676813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 28569196 - 28569228
Alignment:
Q  79 aagctgagctttctccacctcaacttccaaatg 111  Q
    ||||||||||||||| |||||||||||||||||    
T  28569196 aagctgagctttctctacctcaacttccaaatg 28569228  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 43403145 - 43403212
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaa 109  Q
    |||||||||||||| |||||| | || |||| | ||||||||||| ||||||||||||||||||||||    
T  43403145 gtctcctcctagtctcactagagaaacactccacctcaagctgagatttctccacctcaacttccaaa 43403212  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 19753418 - 19753351
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaa 109  Q
    |||||||||||||| |||||| | || |||| | ||||||||||  ||||||||||||||||||||||    
T  19753418 gtctcctcctagtctcactagagaaacactccacctcaagctgatatttctccacctcaacttccaaa 19753351  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 54882030 - 54881992
Alignment:
Q  76 ctcaagctgagctttctccacctcaacttccaaatgtgt 114  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  54882030 ctcaagttgagctttctctacctcaacttccaaatgtgt 54881992  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 19222699 - 19222630
Alignment:
Q  42 gtctcctcctagtcccactagtggaagactcaaactcaagctgagctttctccacctcaacttccaaatg 111  Q
    ||||||||||||||  |||||||||||||   | |||||| |||  ||||||||||||||||| ||||||    
T  19222699 gtctcctcctagtcgtactagtggaagacctcatctcaagttgatttttctccacctcaactttcaaatg 19222630  T

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