View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_low_10 (Length: 423)
Name: NF8793_low_10
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 409
Target Start/End: Complemental strand, 4358445 - 4358039
Alignment:
| Q |
3 |
acgaagctaataaattttcatctatatagctatttcattagtatnnnnnnnncaaactacatagccatttcgatttcttttatcataataatcatcgtct |
102 |
Q |
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| T |
4358445 |
acgaagctaataaattttcatctatatagctatttcattagtataaaaaaa-caaactacatagccatttcgatttcttttatcataataatcatcgtct |
4358347 |
T |
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| Q |
103 |
tggtcttcggcatcctagtaattttacagaatattaatactacaaacttaagtatatatgttgaataatagttctcgtnnnnnnntgttggataatacaa |
202 |
Q |
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| T |
4358346 |
tggtcttcggcatcctagtaattttacagaatattaatactacaaacttaagtatatatgttgaataatagttctcgtaaaaaaatgttggataatacaa |
4358247 |
T |
|
| Q |
203 |
tattactcttgaaaacatgaaaataaaatagacgggggtttgtgttaccttccattata-ttgagatgagattattttcaagcatgaagttgtagtgacg |
301 |
Q |
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| T |
4358246 |
tattactcttgaaaacatgaaaataaaatagacgggggtttgtgttaccttccattataattgagatgagattattttcaagcatgaagttgtagtgacg |
4358147 |
T |
|
| Q |
302 |
gatctatactatttctttagtttgaaaataggtaatattatggggaaataaaattagagttaagattcaaatcaatcttaaaagttaaaccaacattacg |
401 |
Q |
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| T |
4358146 |
gatctatactatttctttagtttgaaaataggtaatattctggggaaataaaattagagtcaagattcaaatcaatcttaaaagttaaaccaacattacg |
4358047 |
T |
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| Q |
402 |
ttgaacct |
409 |
Q |
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| T |
4358046 |
ttgaacct |
4358039 |
T |
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