View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_low_11 (Length: 418)
Name: NF8793_low_11
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 402
Target Start/End: Complemental strand, 23974759 - 23974372
Alignment:
| Q |
15 |
ctgtggaacgtagaactgatgtatgagcatgccaaaataaagttccttcttgttgtgtcactttgaacttatatgtgtacttgtttcctggaattatagg |
114 |
Q |
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| T |
23974759 |
ctgtggaacgtagaactgatgtatgagcatgccaaaataaagttccttcttgttgtgtcactttgaacttatatgtgtacttgtttcctggaattatagg |
23974660 |
T |
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| Q |
115 |
gcattgagttgcatattcaggaccatctgcccaagcactaaacagttgaaacactccatgcctacatatattaagtccaatatttctaaacagattgagc |
214 |
Q |
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| T |
23974659 |
gcattgagttgcatattcaggaccatctgcccaagcactaaacagttgaaacactccatgcctacataaattaagtccaatatttctaaacagattgagc |
23974560 |
T |
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| Q |
215 |
tattaatccaaatgatgcaaggacattgcaaataaatattaaaaataaattttgttaaattcagcaataatttacaaattcagagttagtatttttatct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23974559 |
tattaatccaaatgatgcaaggacattgcaaataaatattaaaaataaattttgttaaattcagcaataatttacaaattcagagttactatttttatct |
23974460 |
T |
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| Q |
315 |
tatttttacacaaaattaagctttactattaggaaaaatagaattaattgaagacataaattagagatgaaaaatatgacaactttgt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23974459 |
tatttttacacaaaattaagctttactattaggaaaaatagaattaattgaagacataaattagagatgaaaaatatgtcaactttgt |
23974372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 23986042 - 23985989
Alignment:
| Q |
22 |
acgtagaactgatgtatgagcatgccaaaataaagttccttcttgttgtgtcac |
75 |
Q |
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||||| |||||||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
23986042 |
acgtacaactgatgcatgagcatgccaccataatgttccttcttgttgtgtcac |
23985989 |
T |
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