View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8793_low_15 (Length: 398)
Name: NF8793_low_15
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_15 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 23)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 9377762 - 9378132
Alignment:
| Q |
12 |
gagaacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9377762 |
gagaacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaa |
9377861 |
T |
|
| Q |
112 |
tacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9377862 |
tacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatca |
9377961 |
T |
|
| Q |
212 |
aagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9377962 |
aagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatt |
9378061 |
T |
|
| Q |
312 |
tatagctacggaatattgttgctagagatggttggaggtagaaagaatactaatgtgttgggggaggaaac |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9378062 |
tatagctacggaatattgttgctagagatggttggaggtagaaagaatactaatgtgttgggggaggaaac |
9378132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 364
Target Start/End: Complemental strand, 9236473 - 9236119
Alignment:
| Q |
10 |
cagagaacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatag |
109 |
Q |
| |
|
|||||||||| || |||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9236473 |
cagagaacaaggaagtttttctcggtagggaaaagttgcaacgaattgctcttggtgttgcaagagggattgagtatcttcatattggttgtgatcatag |
9236374 |
T |
|
| Q |
110 |
aatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||| ||||| |
|
|
| T |
9236373 |
aatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcccaaaataaccgactttggacttgctaaattgtgtccgaaaaac |
9236274 |
T |
|
| Q |
210 |
caaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgata |
309 |
Q |
| |
|
||||| || |||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
9236273 |
caaagcacagtgtctatgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgata |
9236174 |
T |
|
| Q |
310 |
tttatagctacggaatattgttgctagagatggttggaggtagaaagaatactaa |
364 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
9236173 |
tttatagctacggtatgttgttgcttgagatggttggtggaagaaagaatactaa |
9236119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 8939424 - 8939773
Alignment:
| Q |
15 |
aacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatac |
114 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||| ||||||||||| |||| | ||||||||||||||||| || |||||||||||||| | |
|
|
| T |
8939424 |
aacaaggatgttttccttggttgggacttattgcaacaaattgctcttggcattgccaatgggattgagtatcttcaccaaggctgtgatcatagaattc |
8939523 |
T |
|
| Q |
115 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaag |
214 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||| ||||||| ||||| ||| ||||| | ||||| || | ||||| ||||| ||||||||||||| |
|
|
| T |
8939524 |
ttcacttcgatatcaatccacataatgtattattagatgacaatttcgttccaaaaatatcagacttcggtttagctaagctgtgctccaaaaatcaaag |
8939623 |
T |
|
| Q |
215 |
tacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttat |
314 |
Q |
| |
|
||| || || || |||||||| || ||||| || || ||||| |||||||||||||| || ||||||| || ||||| ||||| ||||||||||| || |
|
|
| T |
8939624 |
tacagtatcaatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagtctgatatatac |
8939723 |
T |
|
| Q |
315 |
agctacggaatattgttgctagagatggttggaggtagaaagaatactaa |
364 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
8939724 |
agctacggtatgttgctgctggagatggttggaggaagaaagaatactaa |
8939773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 8926998 - 8927347
Alignment:
| Q |
15 |
aacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatac |
114 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||| |||||||| || |||| | ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
8926998 |
aacaaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattc |
8927097 |
T |
|
| Q |
115 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaag |
214 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||| ||||| | ||| ||||| | ||||| || | || || ||||| | |||||||| || |
|
|
| T |
8927098 |
ttcactttgatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctctaaaaatcatag |
8927197 |
T |
|
| Q |
215 |
tacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttat |
314 |
Q |
| |
|
|| || || || || ||||| || |||||||| || ||||| |||||||||||||| || ||||||| || ||||| ||||| ||||||||||| || |
|
|
| T |
8927198 |
cactgtatcgatgactgcagccaggggaacattaggttacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagtctgatatatac |
8927297 |
T |
|
| Q |
315 |
agctacggaatattgttgctagagatggttggaggtagaaagaatactaa |
364 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8927298 |
agctacggtatgttgttgctagagatggttggaggaagaaagaatactaa |
8927347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 78 - 361
Target Start/End: Complemental strand, 9466731 - 9466448
Alignment:
| Q |
78 |
attgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactg |
177 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| || ||||||| ||||| | ||| |||||||| | |
|
|
| T |
9466731 |
attgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataatgtcttgttagatgagaatttcactcccaaaattacag |
9466632 |
T |
|
| Q |
178 |
actttggacttgctaaactgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaag |
277 |
Q |
| |
|
|||| || | ||||| |||| | ||||||| |||||| |||||||| |||||||| | |||||| || |||||||| ||||| |||||||| || || |
|
|
| T |
9466631 |
acttcggtttggctaagatgtgctcgaaaaatcgaagtacagtgtctatgaccgcagccaaaggaacgttaggctacatggcacccgaagttttttctag |
9466532 |
T |
|
| Q |
278 |
aaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
||||||||| ||||| || || ||||||||||| ||||| || || || |||||| | |||||||||| ||| ||||||||||| |
|
|
| T |
9466531 |
aaacttcgggaatgtctcatataagtctgatatatatagttatggtatgttgttgttggagatggttgcaggaagaaagaatac |
9466448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 361
Target Start/End: Original strand, 9364525 - 9364790
Alignment:
| Q |
96 |
ggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaac |
195 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||| || ||||| || ||||||| ||||| | ||| |||||||| || ||||| | || || |
|
|
| T |
9364525 |
ggttgtgatcaaagaattctacactttgacatcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaaga |
9364624 |
T |
|
| Q |
196 |
tgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttc |
295 |
Q |
| |
|
| ||| | ||||||||||||| || || || || ||||||| |||||||| |||||||| |||||||||||||| ||||||||||| || ||||| || |
|
|
| T |
9364625 |
tatgttcaaaaaatcaaagtatcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctc |
9364724 |
T |
|
| Q |
296 |
ttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
||| ||||||||||| || || ||||| || || ||| | || ||||||||||| ||||||||||| |
|
|
| T |
9364725 |
ttataagtctgatatatacagttacggtatgttattgttggaaatggttggaggaagaaagaatac |
9364790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 96 - 361
Target Start/End: Original strand, 9337666 - 9337931
Alignment:
| Q |
96 |
ggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaac |
195 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||| || ||||| || ||||||| ||||| | ||| |||||||| || ||||| | || || |
|
|
| T |
9337666 |
ggttgtgatcaaagaattctacactttgacatcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaaga |
9337765 |
T |
|
| Q |
196 |
tgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttc |
295 |
Q |
| |
|
| ||| | |||||||||||| || || || || ||||||| |||||||| |||||||| |||||||||||||| ||||||||||| || ||||| || |
|
|
| T |
9337766 |
tatgttcaaaaaatcaaagtgtcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctc |
9337865 |
T |
|
| Q |
296 |
ttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
||| ||||||||||| || || ||||| || || ||| | || ||||||||||| ||||||||||| |
|
|
| T |
9337866 |
ttataagtctgatatatacagttacggtatgttattgttggaaatggttggaggaagaaagaatac |
9337931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 8962351 - 8962700
Alignment:
| Q |
15 |
aacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatac |
114 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||| |||||||| || |||| | || |||||||||||||| || |||||||| ||||| | |
|
|
| T |
8962351 |
aacaaggatgttttccttggttgggacttattgcaacagattgctctaggcattgccaatggaattgagtatcttcaccagggctgtgatcaaagaattc |
8962450 |
T |
|
| Q |
115 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaag |
214 |
Q |
| |
|
|||| |||||||||||||| |||||| | || ||||||| ||||| | ||| ||||| | |||||||| | || || |||| |||||||||||| |
|
|
| T |
8962451 |
ttcattttgatatcaatccgcacaatatcttgttagatgacaattttactccaaaaatatcagactttggtttagccaagttgtgctccaaaaatcaaac |
8962550 |
T |
|
| Q |
215 |
tacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttat |
314 |
Q |
| |
|
|| || || || || || ||||| |||||||| || ||||| ||||||||||| || || ||||||| || ||||| ||||| || |||||||| || |
|
|
| T |
8962551 |
tattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatac |
8962650 |
T |
|
| Q |
315 |
agctacggaatattgttgctagagatggttggaggtagaaagaatactaa |
364 |
Q |
| |
|
||||| ||||| ||| |||| |||||||| ||||| |||||||||||||| |
|
|
| T |
8962651 |
agctatggaatgttgctgctggagatggtcggaggaagaaagaatactaa |
8962700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 359
Target Start/End: Original strand, 9300222 - 9300485
Alignment:
| Q |
96 |
ggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaac |
195 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || || || || || ||||| ||||| | || |||||||| ||||| || | ||||| |
|
|
| T |
9300222 |
ggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaaga |
9300321 |
T |
|
| Q |
196 |
tgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttc |
295 |
Q |
| |
|
|||| | |||||||||||||| | ||||| ||||| || | ||||||||| || ||||| ||||| |||||||| || |||||||| || ||||| || |
|
|
| T |
9300322 |
tgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacccgaagttttttctagaaactttgggaatgtctc |
9300421 |
T |
|
| Q |
296 |
ttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaat |
359 |
Q |
| |
|
||| ||||| ||||| ||||| || || || |||||||| ||||||||||| || || |||||| |
|
|
| T |
9300422 |
ttataagtccgatatatatagttatggcatgttgttgctggagatggttgggggaaggaagaat |
9300485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 334
Target Start/End: Original strand, 10992817 - 10993121
Alignment:
| Q |
30 |
cttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatca |
129 |
Q |
| |
|
||||||||| |||||||||| |||||| | ||| | |||| ||| |||||||||||||| ||||||||||| | || ||||| |||||||||| |
|
|
| T |
10992817 |
cttggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtgatcaacgcatccttcattttgatatca |
10992916 |
T |
|
| Q |
130 |
atccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaagtacggtgtctataac |
229 |
Q |
| |
|
| ||||| ||||||||| | || |||| || | ||| ||||| |||||||||| || |||||| | ||| | | | ||||| || || || || |
|
|
| T |
10992917 |
aaccacaaaatgtgttacttgaccataacttcattccaaaaatatctgactttggtctagctaaattatgttcaagggaccaaagcgtagtttcaatgac |
10993016 |
T |
|
| Q |
230 |
cgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattg |
329 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||| ||||| ||||| |||||||| |||||||| || ||| ||||||| || ||||| || |
|
|
| T |
10993017 |
cgcagctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatgatg |
10993116 |
T |
|
| Q |
330 |
ttgct |
334 |
Q |
| |
|
||||| |
|
|
| T |
10993117 |
ttgct |
10993121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 361
Target Start/End: Complemental strand, 9257487 - 9257219
Alignment:
| Q |
97 |
gttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaact |
196 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||| || ||||| || || ||||| ||||| | || |||||||| | ||||| | ||||| | |
|
|
| T |
9257487 |
gttgtgatcaaagaattcttcactttgacatcaatcctcataatgtcttgatcgatgacaatttaaccccaaaaattacaaattttggtttggctaagat |
9257388 |
T |
|
| Q |
197 |
gtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttct |
296 |
Q |
| |
|
||| | |||||||||||||| | ||||| || ||||| ||||||||||| || ||||| ||||| |||||||| || |||||||| || ||||| ||| |
|
|
| T |
9257387 |
gtgctcaaaaaatcaaagtactatatctatgactgcagcgagaggaacattaggatacatggcacccgaagttttttctagaaactttggtaatgtctct |
9257288 |
T |
|
| Q |
297 |
tac----aagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
|| ||||||||||| |||||||| || |||||| | | || || |||||||| ||||||||||| |
|
|
| T |
9257287 |
taattataagtctgatatatatagctatggtatattgctattggaaattgttggaggaagaaagaatac |
9257219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 10930814 - 10930917
Alignment:
| Q |
231 |
gcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgt |
330 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||||||||| ||||| |||||||| |||||||| || ||| ||||||| || ||||| ||| |
|
|
| T |
10930814 |
gcagctagaggaactttgggctacattgctccagaagttttctcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatgatgt |
10930913 |
T |
|
| Q |
331 |
tgct |
334 |
Q |
| |
|
|||| |
|
|
| T |
10930914 |
tgct |
10930917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 9242600 - 9242254
Alignment:
| Q |
15 |
aacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatac |
114 |
Q |
| |
|
||||| |||| ||| ||||| ||||| ||||||||| |||||||| ||| | || | || ||||||||||| || ||||||||||| ||||| | |
|
|
| T |
9242600 |
aacaaagatgatttccttggatgggataagttgcaaaaaattgctctaggtatagccaatggcattgagtatctccaccaaggttgtgatcaaagaattc |
9242501 |
T |
|
| Q |
115 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaag |
214 |
Q |
| |
|
| |||||||| |||||||| | ||||| || ||||||| ||||| | ||| ||||||| || ||||| | || || ||||| | ||||||||||| |
|
|
| T |
9242500 |
tacactttgacatcaatcctaataatgtcttgttagatgacaatttcattccccaaattacagattttggtttggccaagatgtgttcgaaaaatcaaag |
9242401 |
T |
|
| Q |
215 |
tacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttat |
314 |
Q |
| |
|
|| || || || || || |||| |||||| | |||||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| ||| | || |
|
|
| T |
9242400 |
tattgtatccatgactgcggctaagggaacagtaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatgtatac |
9242301 |
T |
|
| Q |
315 |
agctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
|| ||||| || || ||| | |||||||||||||| ||||||||||| |
|
|
| T |
9242300 |
agttacggtatgttattgttggagatggttggaggaagaaagaatac |
9242254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 10906928 - 10907034
Alignment:
| Q |
228 |
accgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatat |
327 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||| |||||||| |||||||| || ||| ||||||| || ||||| |
|
|
| T |
10906928 |
accgcagctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatga |
10907027 |
T |
|
| Q |
328 |
tgttgct |
334 |
Q |
| |
|
||||||| |
|
|
| T |
10907028 |
tgttgct |
10907034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 11026474 - 11026577
Alignment:
| Q |
231 |
gcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgt |
330 |
Q |
| |
|
|||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| || ||| |||| || || ||||| ||| |
|
|
| T |
11026474 |
gcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgt |
11026573 |
T |
|
| Q |
331 |
tgct |
334 |
Q |
| |
|
|||| |
|
|
| T |
11026574 |
tgct |
11026577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 8861636 - 8861517
Alignment:
| Q |
240 |
ggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgctagaga |
339 |
Q |
| |
|
||||| ||||| ||||| || ||||||||| | |||||||| || || ||||| ||| ||||| |||||||| || |||||||| ||||||||||| | |
|
|
| T |
8861636 |
ggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagtcagatatttacagttacggaatgttgttgctagaaa |
8861537 |
T |
|
| Q |
340 |
tggttggaggtagaaagaat |
359 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
8861536 |
tggttggagggagaaagaat |
8861517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 9125220 - 9125105
Alignment:
| Q |
234 |
gctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgc |
333 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||| ||| |||| || |||||||||||| ||||||||||||||||| || || || ||||||| |
|
|
| T |
9125220 |
gctagaggaaccttgggatatatggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagtctgatatttatagttatgggatgttgttgc |
9125121 |
T |
|
| Q |
334 |
tagagatggttggagg |
349 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
9125120 |
tggaattggttggagg |
9125105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 9495562 - 9495653
Alignment:
| Q |
252 |
tacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgctagagatggt |
343 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||| |||||||| || |||||||||||| ||||||| | ||||| ||||||||||||||||| |
|
|
| T |
9495562 |
tacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatagttttggaatgttgttgctagagatggt |
9495653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 359
Target Start/End: Complemental strand, 9086048 - 9085923
Alignment:
| Q |
234 |
gctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgc |
333 |
Q |
| |
|
||||| ||||| ||||| || || || ||||||||||| ||| |||| || || ||||||||| ||||||||||||||||| || || || ||||||| |
|
|
| T |
9086048 |
gctaggggaaccttgggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagtctgatatttatagttatgggatgttgttgc |
9085949 |
T |
|
| Q |
334 |
tagagatggttggaggtagaaagaat |
359 |
Q |
| |
|
||||||||||||| || || |||||| |
|
|
| T |
9085948 |
tagagatggttggtggaaggaagaat |
9085923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 11041165 - 11041280
Alignment:
| Q |
219 |
gtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagct |
318 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||||| || |||| ||| || ||| ||||||| | |
|
|
| T |
11041165 |
gtgtcaatgaccgcggctagaggaactttgggctacattgctccagaagttttttcaaggaactttggaaacgtgtctttcaaatcggatgtttatagtt |
11041264 |
T |
|
| Q |
319 |
acggaatattgttgct |
334 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
11041265 |
atggaatgatgttgct |
11041280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 8979018 - 8978916
Alignment:
| Q |
258 |
gcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaaga |
357 |
Q |
| |
|
|||||||||||| | |||||||| || || ||||| ||| || ||||||||||||||||| ||||| ||||||||||| ||||||| ||| || |||| |
|
|
| T |
8979018 |
gcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatatttatagctatggaatgttgttgctagaaatggttgcaggaaggaaga |
8978919 |
T |
|
| Q |
358 |
ata |
360 |
Q |
| |
|
||| |
|
|
| T |
8978918 |
ata |
8978916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 359
Target Start/End: Complemental strand, 9069871 - 9069627
Alignment:
| Q |
115 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaag |
214 |
Q |
| |
|
|||||||||| ||||| || | |||||| || |||||||| || | ||| |||||| |||||||||| || || ||| | ||| |||| |||| || |
|
|
| T |
9069871 |
ttcactttgacatcaaccctcgcaatgttttgttagatgattccttcactccaaaaatttctgactttgggctcgccaaattatgtgccaagaatcttag |
9069772 |
T |
|
| Q |
215 |
tacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttat |
314 |
Q |
| |
|
|| ||||| || || || ||||| ||||| ||||| || || ||||| ||||| | || |||| || |||||||||||| ||||||||||| || |
|
|
| T |
9069771 |
tatagtgtccatgacagctgctaggggaaccttgggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagtctgatatatac |
9069672 |
T |
|
| Q |
315 |
agctacggaatattgttgctagagatggttggaggtagaaagaat |
359 |
Q |
| |
|
|| || ||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
9069671 |
agttatggaatgttgttgctagaaatggttggaggaagaaagaat |
9069627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 292
Target Start/End: Complemental strand, 9437790 - 9437552
Alignment:
| Q |
54 |
attgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatg |
153 |
Q |
| |
|
||||||||||| | || | ||| |||||||||||||| || |||||||||| ||| |||||||| ||||| ||||| || || ||| || |||||| |
|
|
| T |
9437790 |
attgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatccccataacgtgctattagatg |
9437691 |
T |
|
| Q |
154 |
ataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggcta |
253 |
Q |
| |
|
| || || ||| ||||||||||| ||||| | || ||| ||||| | ||||||||||| | ||||| |||| || || ||||| || || || || |
|
|
| T |
9437690 |
acaagtttgttccaaaaattactgattttggtttggcgaaattgtgttctaaaaatcaaagcaaagtgtcagtaactgccgcaagagggactttaggtta |
9437591 |
T |
|
| Q |
254 |
cattgcacctgaagttttctcaagaaacttcggaaatgt |
292 |
Q |
| |
|
||||||||||||||| || || || ||||| |||||||| |
|
|
| T |
9437590 |
cattgcacctgaagtgttttcgaggaactttggaaatgt |
9437552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 1653 - 1999
Alignment:
| Q |
15 |
aacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatac |
114 |
Q |
| |
|
||||| |||| ||| ||||| ||||| || ||||||| |||||||| || | |||| || ||||||||||| || ||||||||||| ||||| |
|
|
| T |
1653 |
aacaaagatgatttccttggatgggataaattgcaacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattt |
1752 |
T |
|
| Q |
115 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaag |
214 |
Q |
| |
|
| |||||||| |||||||| || ||| | || ||||||| ||||| | ||| ||||| || || ||||| | ||||| ||||| | ||||||||||| |
|
|
| T |
1753 |
tacactttgacatcaatcctcataatatcttgctagatgacaatttcactcccaaaatcacagattttggtttggctaagatgtgttcgaaaaatcaaag |
1852 |
T |
|
| Q |
215 |
tacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttat |
314 |
Q |
| |
|
|| || || || || |||||| |||||||| |||||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| ||||| || |
|
|
| T |
1853 |
taatgtatccatgactacagctaagggaacattaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatatatac |
1952 |
T |
|
| Q |
315 |
agctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
|| ||||| || || ||| | |||||||||||||| ||||||||||| |
|
|
| T |
1953 |
agttacggtatgttattgttggagatggttggaggaagaaagaatac |
1999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 15910453 - 15910107
Alignment:
| Q |
15 |
aacaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatac |
114 |
Q |
| |
|
||||| |||| ||| ||||| ||||| || ||||||| |||||||| || | |||| || ||||||||||| || ||||||||||| ||||| |
|
|
| T |
15910453 |
aacaaagatgatttccttggatgggataaattgcaacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattt |
15910354 |
T |
|
| Q |
115 |
ttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaactgtgtcccaaaaatcaaag |
214 |
Q |
| |
|
| |||||||| |||||||| || ||| | || ||||||| ||||| | ||| ||||| || || ||||| | ||||| ||||| | ||||||||||| |
|
|
| T |
15910353 |
tacactttgacatcaatcctcataatatcttgctagatgacaatttcactcccaaaatcacagattttggtttggctaagatgtgttcgaaaaatcaaag |
15910254 |
T |
|
| Q |
215 |
tacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttat |
314 |
Q |
| |
|
|| || || || || | ||||| |||||||| |||||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| ||||| || |
|
|
| T |
15910253 |
taatgtatccatgactgtagctaagggaacattaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatatatac |
15910154 |
T |
|
| Q |
315 |
agctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
|| ||||| || || ||| | |||||||||||||| ||||||||||| |
|
|
| T |
15910153 |
agttacggtatgttattgttggagatggttggaggaagaaagaatac |
15910107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 361
Target Start/End: Original strand, 9171631 - 9171896
Alignment:
| Q |
96 |
ggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaac |
195 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||| || || || ||| ||||||| ||||| | || |||||||| ||||| || | ||||| |
|
|
| T |
9171631 |
ggttgtgatcaaagaattcttcactttgacattaatcctcataacgtcttactagatgacaatttcaccccaaaaattacagacttcggtttggctaagt |
9171730 |
T |
|
| Q |
196 |
tgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttc |
295 |
Q |
| |
|
|||| | |||||||||||||| | || || || ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| || || ||||| || |
|
|
| T |
9171731 |
tgtgctcaaaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtctc |
9171830 |
T |
|
| Q |
296 |
ttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaatac |
361 |
Q |
| |
|
||| ||||||||||| |||||||| || || ||| | | || || |||||||| ||||||||||| |
|
|
| T |
9171831 |
ttataagtctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatac |
9171896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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