View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_low_16 (Length: 382)
Name: NF8793_low_16
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 94 - 369
Target Start/End: Original strand, 26317636 - 26317911
Alignment:
| Q |
94 |
gacacaaacaccaatgaatgaatgaatgtttttaacagaatagttatttatatatctttgtgatggattagatgtgtcaagtactgaaaagtcagtcaaa |
193 |
Q |
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| T |
26317636 |
gacacaaacaccaatgaatgaatgaatgtttttaacagaatagttatttatatatctttgtgatggattagatgtgtcaagtactgaaaagtcagtcaaa |
26317735 |
T |
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| Q |
194 |
tataacatgaaatatgacacaatataggaaattaaatccattgattgatggatacttcatggttttggttaaaggatgtgtctattcctaatattgaatg |
293 |
Q |
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| T |
26317736 |
tataacatgaaagatgacacaatataggaaattaaatccattgattgatggatacttcatggttttggttaaaggatgtgtctattcctaatattgaatg |
26317835 |
T |
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| Q |
294 |
agactctacactgtgaatatttagcatagttttttgttccaattctttgattgtgacattttttctatttgtctct |
369 |
Q |
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| T |
26317836 |
agactctacactgtgaatatttagcatagttttttgttccaattccttgattgtgacattttttctatttgtctct |
26317911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 26317549 - 26317600
Alignment:
| Q |
17 |
caaaacttggatatgttaagccaatctgagcttgatctcttcatggtaacac |
68 |
Q |
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| T |
26317549 |
caaaacttggatatgttaagccaatctgagcttgatctcttcatggtaacac |
26317600 |
T |
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