View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_low_17 (Length: 379)
Name: NF8793_low_17
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 160 - 347
Target Start/End: Complemental strand, 30388388 - 30388201
Alignment:
| Q |
160 |
gttacagcgtggaaattatggaagtggataattaagaaaagcggtggtgtgacgttgagggagagatattagaggacggtaatgttttttgacattaaat |
259 |
Q |
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| T |
30388388 |
gttacagcgtggaaattatggaagtggataattaagaaaagcggtggtgtgacgttgagggagagatattagaggacggtaatgttttttgacattaaat |
30388289 |
T |
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| Q |
260 |
ggagaattcttggaacagagaacttggtgatactgtttctttcttaagggattggacttttaatccttatccaagattaagatcccaa |
347 |
Q |
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| T |
30388288 |
ggagaattcttggaacagagaacttggtgatactgtttctttcttaagggattggacttttaatccttatccaagattaagatcccaa |
30388201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 30388498 - 30388429
Alignment:
| Q |
47 |
aggggaatgaggtttatatatatagacacatgtagtgcgtgtttgttcttctaacattcggtgttacgtg |
116 |
Q |
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| T |
30388498 |
aggggaatgaggtttatatatatagacacatgtagtgcgtgtttgttcttctaacattcggtgttacgtg |
30388429 |
T |
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