View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8793_low_18 (Length: 377)
Name: NF8793_low_18
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 35429330 - 35429684
Alignment:
| Q |
5 |
ttcgtgttcagcatcttccgtgatatgtctaacggcatattagacaaacttctgtctggcattaaagaatgtgctagaaatatggttgcactcaacatcg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429330 |
ttcgtgttcagcatcttccgtgatatgtctaacggcatattagacaaacttctgtctggcattaaagaatgtgctagaaatatggttgcactcaacatcg |
35429429 |
T |
|
| Q |
105 |
aagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctatttc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429430 |
aagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctatttc |
35429529 |
T |
|
| Q |
205 |
tcaacaaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaatcg |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429530 |
tcaacaaaatgttggtttgtcattgaaatcggttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaatcg |
35429629 |
T |
|
| Q |
305 |
cagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429630 |
cagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
35429684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 35420195 - 35420545
Alignment:
| Q |
9 |
tgttcagcatcttccgtgatatgtctaacggcatattagacaaacttctgtctggcattaaagaatgtgctagaaatatggttgcactcaacatcgaaga |
108 |
Q |
| |
|
||||||||||| | ||||| || || | |||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
35420195 |
tgttcagcatccttagtgatgtgcctcaaggcatattagacaaacttttgtctgacattaaagattgtgctagaaatatggctgcactcaacatcgaaga |
35420294 |
T |
|
| Q |
109 |
atgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctatttctcaa |
208 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
35420295 |
atctggaacattggagatgaatgtgctgctccttagagttactacactcgttgttgaagaagatggattagatcaatactatcaaagttctatttatcaa |
35420394 |
T |
|
| Q |
209 |
caaaatgtgggtttgtcattgaaatcagttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagt |
308 |
Q |
| |
|
||||||||||||||||||| |||||| | || ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420395 |
caaaatgtgggtttgtcatcgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagt |
35420494 |
T |
|
| Q |
309 |
caaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
359 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35420495 |
cagaactctttcatacaaaatgctctcatatttttcataaagagtgtattg |
35420545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 35423499 - 35423543
Alignment:
| Q |
314 |
ctctttcatacaaaatgctctcatgtttttcataaagagtgtatt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtatt |
35423543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 359
Target Start/End: Original strand, 42974029 - 42974125
Alignment:
| Q |
263 |
gataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
359 |
Q |
| |
|
||||||||||| ||||||||||||||||| || | |||||| ||| |||||| ||| |||||| || |||||||| |||||||||||||||| |
|
|
| T |
42974029 |
gataaatgttcgatttgtttggaggagttttgtaaaggatcgcattcagaactctactatagaaaatgttcgcatgttttccataaagagtgtattg |
42974125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University