View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8793_low_19 (Length: 376)
Name: NF8793_low_19
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_19 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 36 - 376
Target Start/End: Complemental strand, 38553346 - 38553006
Alignment:
| Q |
36 |
ttagagcaactccagttgtagtattttgactcagtccgccaacatgtcacaacctaaatatcagtttttcatgggttcatttgttggagtccgccaagct |
135 |
Q |
| |
|
|||||||||||||| | ||||||||||||| || ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38553346 |
ttagagcaactccactggtagtattttgacccaatccgccagcatgtcacaacccaaatatcagtttttcatgagttcatttgttggagtccgccaagct |
38553247 |
T |
|
| Q |
136 |
ggagttatcggtacttcaacaagtaacgttgctttctgacaccaattgtatatttaatagtattgttgttatgaggatattgtagagagaaagttaattt |
235 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
38553246 |
ggagttatcgttacttcagcaagtaacgttgctttctgacaccaattatatatttaatagtattgttgttttgaggatattggagagaggaagttaattc |
38553147 |
T |
|
| Q |
236 |
tgtttcttgttttatcttccatttatttttgttcgaagaagaaagtgaacggtgacaaactcccaatcactttagtataaaatagaggagttaaaattgt |
335 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38553146 |
tgtttcttgctttatctgccattcatttttgttcagagaagaaagtgaatggtgacaaactcccaatcactttagtataaaatagatgagttaaaattgt |
38553047 |
T |
|
| Q |
336 |
gggcctgatataattttttaagagttacaccattggagtat |
376 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
38553046 |
gggcccaatataactttttaagagttacaccattggagtat |
38553006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 33 - 376
Target Start/End: Original strand, 42636361 - 42636704
Alignment:
| Q |
33 |
ttgttagagcaactccagttgtagtattttgactcagtccgccaacatgtcacaacctaaatatcagtttttcatgggttcatttgttggagtccgccaa |
132 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42636361 |
ttgttagagcaactacagtggtagtattttgacccagtccgtcaacatgtcacaacacaaatatcagtttttcatgggttcatttgttggagtctgccaa |
42636460 |
T |
|
| Q |
133 |
gctggagttatcggtacttcaacaagtaacgttgctttctgacaccaattgtatatttaatagtattgttgttatgaggatattgtagagagaaagttaa |
232 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
42636461 |
gctggagttatcgttacttcagcaagtaacgttgctttctgacaccaattgtatatttaatagtattgttgttttgaggatattgaagagaggaagttaa |
42636560 |
T |
|
| Q |
233 |
ttttgtttcttgttttatcttccatttatttttgttcgaagaagaaagtgaacggtgacaaactcccaatcactttagtataaaatagaggagttaaaat |
332 |
Q |
| |
|
|||||||||||| ||||||| | ||| |||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
42636561 |
ttttgtttcttgctttatctgcaattcatttttgttcagagaagaaagtgaaccatgacaaactccaaatcactttggtataaaatagattagttaaaat |
42636660 |
T |
|
| Q |
333 |
tgtgggcctgatataattttttaagagttacaccattggagtat |
376 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42636661 |
catgggcccaatataattttttaagagttacaccattggagtat |
42636704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University