View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8793_low_2 (Length: 658)

Name: NF8793_low_2
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8793_low_2
NF8793_low_2
[»] chr4 (6 HSPs)
chr4 (1-644)||(588053-588696)
chr4 (491-640)||(18905528-18905677)
chr4 (282-357)||(2423799-2423874)
chr4 (495-565)||(5263319-5263389)
chr4 (153-204)||(18905187-18905241)
chr4 (200-271)||(9074564-9074637)
[»] chr8 (4 HSPs)
chr8 (127-241)||(27843118-27843232)
chr8 (478-535)||(37233305-37233362)
chr8 (469-529)||(14194125-14194185)
chr8 (260-348)||(20657553-20657641)
[»] chr1 (2 HSPs)
chr1 (318-406)||(38571041-38571129)
chr1 (492-538)||(38570909-38570955)
[»] chr7 (2 HSPs)
chr7 (317-546)||(2670063-2670290)
chr7 (176-339)||(5748270-5748435)
[»] chr3 (2 HSPs)
chr3 (491-564)||(29841305-29841378)
chr3 (175-210)||(29340895-29340930)
[»] chr2 (2 HSPs)
chr2 (254-406)||(18690294-18690446)
chr2 (316-348)||(30720174-30720206)
[»] chr6 (1 HSPs)
chr6 (352-401)||(33554329-33554378)
[»] chr5 (1 HSPs)
chr5 (128-204)||(10504595-10504666)


Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 588053 - 588696
Alignment:
Q  1 agtgaccctttattagtagtggtcaattaacaccgacactttattaaacttactatggttggaatgatgatgttgcttggaactatagagtgtgttcgtc 100  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  588053 agtgaccctttattggtagtggtcaattaacactgacactttattaaacttactatggttggaatgatgatgctgcttggaattatagagtgtgttcgtc 588152  T
Q  101 ttcaaggttttagttcgattctcgtcgacaatggttttaatcataattgaataagaccactcaatattcatgcaagacaacaagaacatacattaaacat 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  588153 ttcaaggtttcagttcgattctcgtcgacaatggttttaatcataattgaataagaccactcaatattcatgcaagagaacaagaacatacattaaacat 588252  T
Q  201 aattcaacaatgttaaacactaaataaaacacaacataatacatcggatcaaccaaactaacttcttcatctggtgcttcaatgcaagccctgacttttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  588253 aattcaacaatgttaaacactaaataaaacacaacataatacatcggatcaaccaaactaacttcttcatctggttcttcaatgcaagccctgacttttt 588352  T
Q  301 cggaggtcttgagttgaatcaaactttctcgaatatcttgaaaagatcatcccaaggaagcatcaaatttgatcggtcatttagaactgtattaaccaaa 400  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  588353 cgtaggtcttgggttgaatcaaactttctcgaatatcttgaaaagatcataccaaggaagcatcaaatttgatcggtcatttagaactgtattaaccaaa 588452  T
Q  401 tattgaaatagtattctcacgccgtcgtcggtcctaagcttcatatgaggtgaacatgacgtttctgtctgagtctgtcgatgtacaacaatactcaaca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  588453 tattgaaatagtattctcacgccgtcgtcggtcctaagcttcatatgaggtgatcatgacgtttctgtctgagtctgtcgatgtacaacaatactcaaca 588552  T
Q  501 ttgtccaccttccttatgtctatgtggttaagtcgatgattgatttagtctagatgatccttcaatccacacaacatgagatcaactaagactctaaaca 600  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  588553 ttgtccaccttccttatgtctatgtggttaagtcaatgattgatttagtctagatgatccttcaatccacacaacgtgagatcaactaagactctaaaca 588652  T
Q  601 tattgggttttctctgttgtagtaaaatgcggctaacttgatgt 644  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  588653 tattgggttttctccgttgtagtaaaatgcggctaacttgatgt 588696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 491 - 640
Target Start/End: Original strand, 18905528 - 18905677
Alignment:
Q  491 atactcaacattgtccaccttccttatgtctatgtggttaagtcgatgattgatttagtctagatgatccttcaatccacacaacatgagatcaactaag 590  Q
    |||||||||| |||||||| ||||| ||||| ||||||| ||| || | || |||| |||||| | ||||||||| ||| || |  ||| ||||||  ||    
T  18905528 atactcaacaatgtccaccatccttgtgtctttgtggttgagttgacggtt-atttggtctagcttatccttcaacccagactatgtgacatcaacctag 18905626  T
Q  591 actctaaacatattgggttttctct-gttgtagtaaaatgcggctaacttg 640  Q
    || ||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  18905627 accctaaacaaattgggttttctctcgttgtagtaaactgcggctaacttg 18905677  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 2423799 - 2423874
Alignment:
Q  282 atgcaagccctgactttttcggaggtcttgagttgaatcaaactttctcgaatatcttgaaaagatcatcccaagg 357  Q
    ||||||||||||| || |||| | ||| ||||| |||||||| |||| ||||||||||||||||||||| ||||||    
T  2423799 atgcaagccctgatttattcgtaagtcctgagtcgaatcaaattttcccgaatatcttgaaaagatcataccaagg 2423874  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 5263389 - 5263319
Alignment:
Q  495 tcaacattgtccaccttccttatgtctatgtggttaagtcgatgattgatttagtctagatgatccttcaa 565  Q
    |||||||| |||||| ||||| ||||| ||| |||||||||||| ||||||| |||| | |||||||||||    
T  5263389 tcaacattatccaccctccttgtgtctttgttgttaagtcgatggttgatttggtctggctgatccttcaa 5263319  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 18905187 - 18905241
Alignment:
Q  153 aagaccactcaatattcatgcaag---acaacaagaacatacattaaacataatt 204  Q
    ||||||||||||||||||| ||||   ||||||| ||||||||||||||||||||    
T  18905187 aagaccactcaatattcatccaagacaacaacaaaaacatacattaaacataatt 18905241  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 9074564 - 9074637
Alignment:
Q  200 taattcaacaatgttaaacactaaataaaacacaacataatacatc--ggatcaaccaaactaacttcttcatc 271  Q
    |||||||||||  | ||||||  ||||||||| ||||||||| |||  | ||||||||||||||||||||||||    
T  9074564 taattcaacaacttaaaacacataataaaacaaaacataatagatcacgcatcaaccaaactaacttcttcatc 9074637  T

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Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 27843232 - 27843118
Alignment:
Q  127 gacaatggttttaatcataattgaataagaccactcaatattcatgcaagacaacaagaacatacattaaacataattcaacaatgttaaacactaaata 226  Q
    |||||||||| | |||||||||| | || |||||||||||| ||||||||||||||| || ||||||||| ||||| ||||||| || ||||||  ||||    
T  27843232 gacaatggttcttatcataattggacaaaaccactcaatatccatgcaagacaacaacaatatacattaagcataactcaacaacgtaaaacacataata 27843133  T
Q  227 aaacacaacataata 241  Q
    |||||  ||||||||    
T  27843132 aaacatgacataata 27843118  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 535
Target Start/End: Complemental strand, 37233362 - 37233305
Alignment:
Q  478 tcgatgtacaacaatactcaacattgtccaccttccttatgtctatgtggttaagtcg 535  Q
    |||||| || || ||||||||||||||||||| ||||| |||||||||||| ||||||    
T  37233362 tcgatggacgacgatactcaacattgtccaccctccttgtgtctatgtggtcaagtcg 37233305  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 529
Target Start/End: Original strand, 14194125 - 14194185
Alignment:
Q  469 ctgagtctgtcgatgtacaacaatactcaacattgtccaccttccttatgtctatgtggtt 529  Q
    ||||||| ||||||| ||  | ||||||||||  ||||||||| |||||||||||||||||    
T  14194125 ctgagtcggtcgatggacttcgatactcaacaccgtccacctttcttatgtctatgtggtt 14194185  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 348
Target Start/End: Complemental strand, 20657641 - 20657553
Alignment:
Q  260 aacttcttcatctggtgcttcaatgcaagccctgactttttcggaggtcttgagttgaatcaaactttctcgaatatcttgaaaagatc 348  Q
    ||||||||||||||||   || |||||||| |||| || |||| || | ||| |  ||||||||||||||||||| ||||| |||||||    
T  20657641 aacttcttcatctggtctatccatgcaagctctgatttcttcgtagtttttgggacgaatcaaactttctcgaatgtcttggaaagatc 20657553  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 38571129 - 38571041
Alignment:
Q  318 atcaaactttctcgaatatcttgaaaagatcatcccaaggaagcatcaaatttgatcggtcatttagaactgtattaaccaaatattga 406  Q
    ||||||||||||||||||||||  |||||||   |||||||||| || || |||||||||  |||||||||||||| ||||||| ||||    
T  38571129 atcaaactttctcgaatatctttgaaagatccgaccaaggaagcgtccaacttgatcggttctttagaactgtatttaccaaatgttga 38571041  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 38570955 - 38570909
Alignment:
Q  492 tactcaacattgtccaccttccttatgtctatgtggttaagtcgatg 538  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  38570955 tactcaacattgtccaccctccttatgtctttgtggttgagtcgatg 38570909  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 546
Target Start/End: Original strand, 2670063 - 2670290
Alignment:
Q  317 aatcaaactttctcgaatatcttgaaaagatcatcccaaggaagcatcaaatttgatcggtcatttagaactgtattaaccaaatattga-aatagtatt 415  Q
    ||||||||||| | ||||||||| |||||||| | |||| ||||| || || |  ||||||| ||||| | || ||| |||||||||||| || | | ||    
T  2670063 aatcaaacttttttgaatatcttcaaaagatcttaccaatgaagcgtccaactcaatcggtcctttagtaatgcattgaccaaatattgagaacattgtt 2670162  T
Q  416 ctcacgccgtcgtcggtcctaagcttcatatgaggtgaacatgacgtttctgtctgagtctgtcgatgtacaacaatactcaacattgtccaccttcctt 515  Q
    |||||| |||| ||| || || ||||||| | |||||||   |||| |||| |||||||| |||||||  || | ||| |||||| |||||||| |||||    
T  2670163 ctcacgtcgtcatcgttcttatgcttcat-ttaggtgaattagacgcttctatctgagtcggtcgatgggcatcgatattcaacactgtccaccctcctt 2670261  T
Q  516 atgtctatgtggttaagtcgatgattgattt 546  Q
     ||||||  ||||| |||||| |||||||||    
T  2670262 gtgtcta--tggttgagtcgacgattgattt 2670290  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 5748435 - 5748270
Alignment:
Q  176 gacaacaagaacatacattaaacataattcaacaatgttaaacactaaataaaacacaacataatacatc--ggatcaaccaaactaacttcttcatctg 273  Q
    |||||||| |||||||||| ||||| |||||||||  | |||||   ||||||| |||| |||||| |||  ||||||| ||||||||||||||||| ||    
T  5748435 gacaacaaaaacatacattgaacatgattcaacaacttaaaacatataataaaatacaatataataaatcacggatcaatcaaactaacttcttcatatg 5748336  T
Q  274 gtgcttcaatgcaagccctgactttttcggaggtcttgagttgaatcaaactttctcgaatatctt 339  Q
     | | ||  ||||||| |||| || |||| ||||| ||   ||||||||||||||  |||||||||    
T  5748335 tttcatctttgcaagctctgatttcttcgtaggtcatggtctgaatcaaactttcatgaatatctt 5748270  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 564
Target Start/End: Original strand, 29841305 - 29841378
Alignment:
Q  491 atactcaacattgtccaccttccttatgtctatgtggttaagtcgatgattgatttagtctagatgatccttca 564  Q
    |||||||| |||||||||| || || ||||||||||||| | |||||| |||||||  ||||| ||||||||||    
T  29841305 atactcaaaattgtccaccctctttgtgtctatgtggttgattcgatggttgatttgatctaggtgatccttca 29841378  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 29340930 - 29340895
Alignment:
Q  175 agacaacaagaacatacattaaacataattcaacaa 210  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29340930 agacaacaacaacatacattaaacataattcaacaa 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 406
Target Start/End: Original strand, 18690294 - 18690446
Alignment:
Q  254 caaactaacttcttcatctggtgcttcaatgcaagccctgactttttcggaggtcttgagttgaatcaaactttctcgaatatcttgaaaagatcatccc 353  Q
    |||||||| ||||||||||||| | || ||||||||  ||| || | || ||||| || | |||||||||||||||| |||| ||| |||||| |   ||    
T  18690294 caaactaatttcttcatctggttcctccatgcaagctttgatttctccgtaggtcatgggctgaatcaaactttctccaatagcttaaaaagacctgacc 18690393  T
Q  354 aaggaagcatcaaatttgatcggtcatttagaactgtattaaccaaatattga 406  Q
    |||||||| || || |||||  ||| ||||||||| || |  |||||||||||    
T  18690394 aaggaagcgtccaacttgattagtcctttagaactatactggccaaatattga 18690446  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 30720174 - 30720206
Alignment:
Q  316 gaatcaaactttctcgaatatcttgaaaagatc 348  Q
    |||||||| ||||||||||||||||||||||||    
T  30720174 gaatcaaattttctcgaatatcttgaaaagatc 30720206  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 33554378 - 33554329
Alignment:
Q  352 ccaaggaagcatcaaatttgatcggtcatttagaactgtattaaccaaat 401  Q
    |||| |||||||| ||||||||||||| ||||| |||||| |||||||||    
T  33554378 ccaatgaagcatccaatttgatcggtcttttagtactgtactaaccaaat 33554329  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 10504666 - 10504595
Alignment:
Q  128 acaatggttttaatcataattgaataagaccactcaatattcatgcaagacaacaagaacatacattaaacataatt 204  Q
    |||||| || |||||||||||| | |||| |||||||||| |||| ||||||     ||||||||||||||||||||    
T  10504666 acaatgcttctaatcataattggacaagatcactcaatatccatgtaagaca-----aacatacattaaacataatt 10504595  T

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