View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8793_low_23 (Length: 316)
Name: NF8793_low_23
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 1300366 - 1300214
Alignment:
| Q |
18 |
atatcttgattttggaagttcttaaacatatatatagtattcaagtttaggttttgggttttttcttttcttattctaatttgagtagcatatttaaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300366 |
atatcttgattttggaagttcttaaacatatatagagtattgaagtttaggtttttggttttttcttttcttattctaatttgagtagcatatttaaaaa |
1300267 |
T |
|
| Q |
118 |
tcatcattcttccagatcaagatccttttcaggctttttgtgctctagttaat |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300266 |
tcatcattcttccagatcaagatccttttcaggctttttgtgctctagttaat |
1300214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 1299997 - 1299875
Alignment:
| Q |
184 |
atgtcttctctctacattcaaaaaccacatgagtctaggttccaccattttatctactataggtatgttgtctcaactctctatccaatgttgttatttt |
283 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1299997 |
atgtcttctctctgcatgcaaaaaccacacgagtctaggttccaccattttatctactataggtatgttgtctcaactctctatccaatgttgttatttt |
1299898 |
T |
|
| Q |
284 |
taatcatataatgtctagtatta |
306 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
1299897 |
taatcatatcatgtctagtatta |
1299875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 8658189 - 8658090
Alignment:
| Q |
72 |
tgggttttttcttttcttattctaatttgagtagcatatttaaaaatcatcattcttccagatcaagatccttttcaggctttttgtgctctagttaata |
171 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8658189 |
tgggttttttcttttcgtattctaatttgagtagcatatttgaaa---atcattcttccag---aagatccttctcaggatttttgtgctctagttaata |
8658096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 54470278 - 54470172
Alignment:
| Q |
184 |
atgtcttctctctacattcaaaaaccacatgagtctaggttccaccattttatctactataggtatgttgtctcaactctctatccaatgttgttatttt |
283 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||| ||||||||| || ||||||||||| || | | ||||||||| || ||||||||||||| |
|
|
| T |
54470278 |
atgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactatagg--tgctaccccaactctctctctaatgttgttatttc |
54470181 |
T |
|
| Q |
284 |
taatcatat |
292 |
Q |
| |
|
|||||||| |
|
|
| T |
54470180 |
aaatcatat |
54470172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 40759169 - 40759111
Alignment:
| Q |
186 |
gtcttctctctacattcaaaaaccacatgagtctaggttccaccattttatctactata |
244 |
Q |
| |
|
||||||||||||||| || ||||||| | | ||||| |||||||||||| ||||||||| |
|
|
| T |
40759169 |
gtcttctctctacatgcacaaaccacctaactctagtttccaccattttttctactata |
40759111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 3987116 - 3987055
Alignment:
| Q |
186 |
gtcttctctctacattcaaaaaccacatgagtctaggttccaccattttatctactataggt |
247 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||| ||| ||||| || |||||||||||| |
|
|
| T |
3987116 |
gtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctactataggt |
3987055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University