View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8793_low_24 (Length: 309)

Name: NF8793_low_24
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8793_low_24
NF8793_low_24
[»] chr6 (17 HSPs)
chr6 (17-292)||(11208967-11209242)
chr6 (17-292)||(11170145-11170420)
chr6 (17-292)||(11275529-11275804)
chr6 (43-292)||(11196339-11196573)
chr6 (166-292)||(11155994-11156120)
chr6 (166-292)||(11160861-11160987)
chr6 (166-292)||(11199437-11199563)
chr6 (166-292)||(11241741-11241867)
chr6 (196-292)||(11315051-11315147)
chr6 (88-140)||(11315188-11315240)
chr6 (169-239)||(11132721-11132791)
chr6 (78-140)||(11155921-11155983)
chr6 (78-140)||(11199364-11199426)
chr6 (43-140)||(11160753-11160850)
chr6 (43-140)||(11241878-11241975)
chr6 (26-74)||(11319818-11319866)
chr6 (88-144)||(11132655-11132711)
[»] scaffold1207 (1 HSPs)
scaffold1207 (100-292)||(546-738)
[»] chr7 (1 HSPs)
chr7 (84-144)||(39985303-39985363)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 11208967 - 11209242
Alignment:
Q  17 acaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatctcaccacttgctataaaagcctggacagcagcgccatatgcaaccgcctc 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  11208967 acaaaggattgacttccctcaatgtcaaatcttgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctc 11209066  T
Q  117 atctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccg 216  Q
    |||||||||||||||||| ||||||||||||||||| |  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  11209067 atctgcattgatgcttttacataactccgtcccactaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccg 11209166  T
Q  217 ccaacaagcacaacatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgc 292  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  11209167 ccaacaagcacaacatcatgaatgttactcttcactatcccactatcttctatacacttttctacaatctccatgc 11209242  T

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Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 11170145 - 11170420
Alignment:
Q  17 acaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatctcaccacttgctataaaagcctggacagcagcgccatatgcaaccgcctc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11170145 acaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctc 11170244  T
Q  117 atctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccg 216  Q
    |||| |||||||| |||| ||||||||||||||||| | ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11170245 atctacattgatgtttttacataactccgtcccactacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccg 11170344  T
Q  217 ccaacaagcacaacatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgc 292  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11170345 ccaacaagcacaacatcatgaattttactcttcactatcccactatcttctatacacttttctacactctccatgc 11170420  T

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Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 11275529 - 11275804
Alignment:
Q  17 acaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatctcaccacttgctataaaagcctggacagcagcgccatatgcaaccgcctc 116  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||| |||||||||   ||||||||| |||| ||||||||||||||||||||||||    
T  11275529 acaatggattaacttccctcaatgtcaaatcttgaaacttttcacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctc 11275628  T
Q  117 atctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccg 216  Q
    |||||||||||||||||||||||||| |||||  ||   ||  |||||| | |||||||||| |||||| | |||||||||||||||||||||||| |||    
T  11275629 atctgcattgatgcttttgcataacttcgtcctgctatgctcattaatttcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccg 11275728  T
Q  217 ccaacaagcacaacatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgc 292  Q
    ||||||||||||||||||||||||||| ||||   |||||||||||||  |||||||||||||||| | |||||||    
T  11275729 ccaacaagcacaacatcatgaatgttactcttgtttatcccactatctgctatacacttttctacaatttccatgc 11275804  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 43 - 292
Target Start/End: Original strand, 11196339 - 11196573
Alignment:
Q  43 aaatcttgaaacttttcacaaatctcaccacttgctataaaagcctggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataact 142  Q
    |||||||||| ||| |||| || |||||||||   |||| |||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||      
T  11196339 aaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaa 11196438  T
Q  143 ccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgtt 242  Q
     | |||| |               ||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |    
T  11196439 gcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgct 11196523  T
Q  243 agtcttcactatcccactatcttttatacacttttctacactctccatgc 292  Q
    | ||||  | |||||||||||  ||||||||||||| ||| |||||||||    
T  11196524 actcttgtccatcccactatcaattatacacttttccacaatctccatgc 11196573  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 11155994 - 11156120
Alignment:
Q  166 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 265  Q
    |||||||||||| |||  | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11155994 ccgaagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11156093  T
Q  266 ttatacacttttctacactctccatgc 292  Q
    ||||||||||||| ||| |||||||||    
T  11156094 ttatacacttttccacaatctccatgc 11156120  T

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Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 11160861 - 11160987
Alignment:
Q  166 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 265  Q
    |||||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11160861 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11160960  T
Q  266 ttatacacttttctacactctccatgc 292  Q
    ||||||||||||||||| |||||||||    
T  11160961 ttatacacttttctacaatctccatgc 11160987  T

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Target: chr6; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 11199437 - 11199563
Alignment:
Q  166 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 265  Q
    |||||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11199437 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11199536  T
Q  266 ttatacacttttctacactctccatgc 292  Q
    ||||||||||||||||| |||||||||    
T  11199537 ttatacacttttctacaatctccatgc 11199563  T

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Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 166 - 292
Target Start/End: Complemental strand, 11241867 - 11241741
Alignment:
Q  166 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 265  Q
    |||||||||||| |||  | |||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11241867 ccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11241768  T
Q  266 ttatacacttttctacactctccatgc 292  Q
    ||||||||||||| ||| |||||||||    
T  11241767 ttatacacttttccacaatctccatgc 11241741  T

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Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 11315147 - 11315051
Alignment:
Q  196 tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgc 292  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||| || ||||||||||| | || ||||||||||||| ||| |||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgc 11315051  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
Q  88 tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 140  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11315240 tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa 11315188  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 11132721 - 11132791
Alignment:
Q  169 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat 239  Q
    ||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  11132721 aagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat 11132791  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 11155921 - 11155983
Alignment:
Q  78 tataaaagcctggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 140  Q
    |||| |||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  11155921 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11155983  T

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Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 11199364 - 11199426
Alignment:
Q  78 tataaaagcctggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 140  Q
    |||| |||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  11199364 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11199426  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 11160753 - 11160850
Alignment:
Q  43 aaatcttgaaacttttcacaaatctcaccacttgctataaaagcctggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 140  Q
    |||||||||| ||| |||| |  |||||||||   |||| |||| |||||||||||||||||||| || ||||||||  |||||||||||||||||||    
T  11160753 aaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgccactgcctcatcgacattgatgcttttgcataa 11160850  T

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Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 11241975 - 11241878
Alignment:
Q  43 aaatcttgaaacttttcacaaatctcaccacttgctataaaagcctggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 140  Q
    |||||||||| ||| |||| || |||||||||   |||| |||| |||||| ||||||||||||| || ||||||||  |||||||||||||||||||    
T  11241975 aaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgccatatgccacagcctcatcgacattgatgcttttgcataa 11241878  T

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Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
Q  26 tgacatccctcaatgtcaaatcttgaaacttttcacaaatctcaccact 74  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  11319866 tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact 11319818  T

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Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 11132655 - 11132711
Alignment:
Q  88 tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactcc 144  Q
    ||||||||||| ||| ||||||  || ||||||||||| ||||||||||||||||||    
T  11132655 tggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc 11132711  T

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Target: scaffold1207 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 546 - 738
Alignment:
Q  100 ccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcactttta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||   ||  |||||| | |||||||||| ||||||   ||| |||||||    
T  546 ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaactttta 645  T
Q  200 caatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgc 292  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||| ||||   |||||||||||||  |||||| |||||||||||||||||||    
T  646 caatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgc 738  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 39985303 - 39985363
Alignment:
Q  84 agcctggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactcc 144  Q
    |||||| |||||||| ||||||||||| |||||||| | ||| ||||| ||||||| ||||    
T  39985303 agcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgcatagctcc 39985363  T

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