View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8793_low_27 (Length: 270)
Name: NF8793_low_27
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 29932295 - 29932056
Alignment:
| Q |
13 |
ttattcttagtggtaatttattgattcacttgtttcgattctgactagaacaactttttactagaatttacttacttttggactggacgctaaattacca |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
29932295 |
ttattcttagtggtaacttattgattcacttgtttcgattctgactagaacaactttttactagaatttacttacttttggaccgaacactaaattacca |
29932196 |
T |
|
| Q |
113 |
tagcctattcccactaggaacgagtgtgttgagacaacaaaagaaaatttaattccctagtaattcaatgtgttgtagtgaagtgtaacttgatacatag |
212 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29932195 |
tagcctattcccgctaggaacgagagtgttgagacaacaaaagaaaatttaattccctagtaattcgatgtgttgtagtgaagtgtaacttgatacatag |
29932096 |
T |
|
| Q |
213 |
aagaattttgattgatgggtttgattaatctgaaatataa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29932095 |
aagaattttgattgatgggtttgattaatctgaaatataa |
29932056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University