View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_low_3 (Length: 599)
Name: NF8793_low_3
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 5688929 - 5688376
Alignment:
| Q |
1 |
caggtcacacataaacccgagaacatcgtataataaccaaatataataatgtatatataatgatgaatggtttatttaaccccattaatagtcacgctga |
100 |
Q |
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| T |
5688929 |
caggtcacacataaacccgagaacatcgtataataaccaaatataataatgtatatataatgatgaatggtttatttaactccattattagtcacgctga |
5688830 |
T |
|
| Q |
101 |
aaatgggaaggatgagatgaatgagaatatgtgtagagctctcaaaatgggttatctaaccttaaacagatcggccttaacaacctttatcgcgttaggc |
200 |
Q |
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| T |
5688829 |
aaatgggaaggatgagat---------tatgtgtagagctctcaaaatgggttatctaaccttaaagagatcggccctaacaacctttatcgctttaggc |
5688739 |
T |
|
| Q |
201 |
caaaaagttctttcaagtatgagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttannnnnnnga |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5688738 |
caaaaagttctttcaagtacgagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttatttttttga |
5688639 |
T |
|
| Q |
301 |
aaatattataaagactctcacaaaatttcttataaacattattttgnnnnnnnntctgagactatattttatgattcaaactctacattttattagattt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5688638 |
aaatattataaagactctcacaaaatttcttataaacattattttgaaaaaaaatctgagactatattttatggttcaaactctacattttattagattt |
5688539 |
T |
|
| Q |
401 |
ggcgggctagcccatttttacaactctaaatatgtatgtggaacctgtaagtgaagttggtagtgatggaggtgaagttgtgcgtcttagaccagccttt |
500 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5688538 |
ggcgggctagcccatttttaca---------------gtggaacctgtaagtgaagttggtagtgatggaggtgaagtt------------ccagccttt |
5688466 |
T |
|
| Q |
501 |
tgtttactcataatgttgtactggcgggagctgcaaaccatccccagccataagaaatgattgtcattagttagaattatcgagaattat |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
5688465 |
tgtttactcataatgttgtactggcgggagctgcaaaccatcccccgccataagaaatgattgtcattagttcgaattatcgaggattat |
5688376 |
T |
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