View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_low_8 (Length: 449)
Name: NF8793_low_8
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 24608068 - 24608487
Alignment:
| Q |
18 |
taatttaggtttcactattctaactatttaatttctatggcttaggtttcacttttctaagtaaaaccgagtaaaagcatttgacctctagaatcgtttg |
117 |
Q |
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| T |
24608068 |
taatttaggtttcactattctaactatttaatttctatgacttaggtttcccttttcaaagtaaaaccgagtaaaagcattagacctctagaatcgtttg |
24608167 |
T |
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| Q |
118 |
ttacattttaatcacc-aagagttgttttgttgccatcatcacacctcaacattgaccatgtaagaattagttgttgcagattcgatgttcggcatcccg |
216 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24608168 |
ttacattttaatcacctaagagttgttctgttgccatcatcacacctcaacattgaccatgtaagaattagttgttgcagattcgatgctcggcatcccg |
24608267 |
T |
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| Q |
217 |
agtccaaaccaaaccaagagttgttccgttaataagttgtaagttctcttcgaagaaaacaaagcagacctcatattatatgaagaaataagttaagacc |
316 |
Q |
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| T |
24608268 |
agtccaaaccaaaccaagagttgttcagttaataagttgtaagttctcttcgaagaaaacaaagcagacctcatattatatgaagaaataagttaagacc |
24608367 |
T |
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| Q |
317 |
tcatattgcttgagtaagacttacaacagcattgtatgatcatccaattttcccttaacaatctgataatcccttaaaggagacatgatttatttttctt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24608368 |
tcatattgcttgagtaagacttacaacagcattgtatgatcatccaattttcccttaacaatctgataatcccttaaaggagacaggatttatttttctt |
24608467 |
T |
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| Q |
417 |
gaattttaatttagtataat |
436 |
Q |
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| T |
24608468 |
gaattttaatttagtataat |
24608487 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 13842191 - 13842244
Alignment:
| Q |
149 |
gccatcatcacacctcaacattgaccatgtaagaattagttgttgcagattcga |
202 |
Q |
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| T |
13842191 |
gccatcatcaaacctcaacactgatcatgtaagaattagttgttgtaggttcga |
13842244 |
T |
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