View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8793_low_9 (Length: 444)
Name: NF8793_low_9
Description: NF8793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8793_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 32110582 - 32110165
Alignment:
| Q |
18 |
ataagaaagagaggaagtatataggtcaaagaagacaagtatgccttacaagttggtgtgcttcaaccatatgaaaaagaacaagtgagaggagaagtga |
117 |
Q |
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| T |
32110582 |
ataagaaagagaggaagtatataggtcaaagaagacaagtatgccttacaagttggtgtgcttcaaccatatgaaaaagaacaagtgagaggagaagtga |
32110483 |
T |
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| Q |
118 |
tgaaacaatgaagcttctagagaatgccatagtgtgtggaggattcaagtactatatgatatgaagtgagattacnnnnnnngcttataagtatttatag |
217 |
Q |
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| T |
32110482 |
tgaaacaatgaagcttctagagaatgccatcgtatgtggaggattcaagtactatatgatatgaagtgagattacaaagaa-gcttataagtatttatag |
32110384 |
T |
|
| Q |
218 |
aaagagtacgtgaaacgtgttcatgaatgattagatagatatacacaatgaattggatgccaaacaatgagagcacagcgaaggtgctgcttttgacagg |
317 |
Q |
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| T |
32110383 |
aaagagtacgtgaaatgtgttcatgaatgattagata--tatacacaatgaattggatgccaaacaatgagagcacagcgaaggtgctgcttttgacagg |
32110286 |
T |
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| Q |
318 |
ctaatccagcacataaagatgaaccccacaaaacgcggtgctactacaatatacaaacgataactaaaattgtagttagtcttattttaattttttgata |
417 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32110285 |
ctaatccagcacaaaaagatgaaccccacaaaacgcggtgctactacaatatacaaaagataactaaaattgtagttagtcttattttaattttttgata |
32110186 |
T |
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| Q |
418 |
tacttcagtataatctaccca |
438 |
Q |
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||||||| |||||| |||||| |
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| T |
32110185 |
tacttcattataatgtaccca |
32110165 |
T |
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