View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8794_high_1 (Length: 549)
Name: NF8794_high_1
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8794_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 26845672 - 26846192
Alignment:
| Q |
19 |
tcagaaccaacttgctcactccctctttactcatagaaagagaatcacacatggagagagtcagaaaataaataggtcttgtaatggcactcatccaaat |
118 |
Q |
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| T |
26845672 |
tcagaaccaacttgctcactccctctttactcatagaaagagaatcacacatggagagagtcagaaaataaataggtcttgtaatggcactcatccaaat |
26845771 |
T |
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| Q |
119 |
ttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttagctgttctctctgatccatgatgcaaaatctcacaccaaacgcccataa |
218 |
Q |
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| T |
26845772 |
ttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttagctgttctctctgatccatgatgcaaaatctcacaccaaacgcccataa |
26845871 |
T |
|
| Q |
219 |
ttcatcagatcccaatgtagtagaaatagcacgcacttacaggcggcattagttgatctcggccattgatttaaaatcgatcggctcacattgcaccttt |
318 |
Q |
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| T |
26845872 |
ttcatcagatcccaatgtagtagaaatagcacgcacttacacgc---attagttgatctcggccattgatttaaaatcgatcggctcacattgcaccttt |
26845968 |
T |
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| Q |
319 |
cctacattaaatttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatctccaaaacgctcaaaagtaag |
418 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845969 |
cctacattaactttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatctccaaaacgctcaaaagtaag |
26846068 |
T |
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| Q |
419 |
gagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaatcaatgtgatcgcaatatcc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26846069 |
gagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaatcaatgtgatcgcaatatcc |
26846168 |
T |
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| Q |
519 |
actatgccaacaaggtctctgcta |
542 |
Q |
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|||||||||||||||||||||||| |
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| T |
26846169 |
actatgccaacaaggtctctgcta |
26846192 |
T |
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