View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8794_high_2 (Length: 450)

Name: NF8794_high_2
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8794_high_2
NF8794_high_2
[»] chr5 (9 HSPs)
chr5 (16-433)||(29364786-29365205)
chr5 (181-433)||(30267381-30267637)
chr5 (16-153)||(30267636-30267773)
chr5 (244-297)||(8420035-8420088)
chr5 (244-297)||(32630733-32630786)
chr5 (244-287)||(15405063-15405106)
chr5 (217-278)||(14817041-14817103)
chr5 (244-280)||(5616227-5616263)
chr5 (244-280)||(23012423-23012459)
[»] chr1 (10 HSPs)
chr1 (244-297)||(5927338-5927391)
chr1 (239-278)||(17080898-17080937)
chr1 (244-295)||(21057791-21057842)
chr1 (244-287)||(43609826-43609869)
chr1 (246-291)||(8203831-8203876)
chr1 (244-293)||(32461465-32461514)
chr1 (244-297)||(38078659-38078712)
chr1 (244-297)||(41877468-41877521)
chr1 (244-297)||(46348381-46348434)
chr1 (239-275)||(44247640-44247676)
[»] chr4 (7 HSPs)
chr4 (244-295)||(51701266-51701317)
chr4 (244-294)||(20119953-20120003)
chr4 (244-297)||(38847010-38847063)
chr4 (245-282)||(44796975-44797012)
chr4 (246-294)||(18783987-18784035)
chr4 (244-280)||(19230324-19230360)
chr4 (239-287)||(19262932-19262980)
[»] chr3 (6 HSPs)
chr3 (234-287)||(17568691-17568744)
chr3 (243-297)||(21110461-21110515)
chr3 (244-297)||(8383265-8383318)
chr3 (235-280)||(21419470-21419515)
chr3 (244-280)||(21161514-21161550)
chr3 (243-287)||(28576723-28576767)
[»] chr8 (7 HSPs)
chr8 (244-295)||(21465420-21465471)
chr8 (244-293)||(6252495-6252544)
chr8 (244-297)||(22596002-22596055)
chr8 (221-289)||(2517093-2517160)
chr8 (218-277)||(11815810-11815870)
chr8 (244-280)||(12606844-12606880)
chr8 (250-294)||(27733861-27733905)
[»] chr7 (5 HSPs)
chr7 (224-278)||(31753779-31753834)
chr7 (244-297)||(21880160-21880213)
chr7 (244-297)||(25481910-25481963)
chr7 (235-295)||(7058425-7058485)
chr7 (239-287)||(27945044-27945092)
[»] chr2 (6 HSPs)
chr2 (246-293)||(1527887-1527934)
chr2 (242-277)||(3103540-3103575)
chr2 (244-295)||(15098105-15098156)
chr2 (244-287)||(44605147-44605190)
chr2 (235-276)||(5526792-5526833)
chr2 (250-294)||(18512143-18512187)
[»] scaffold0011 (1 HSPs)
scaffold0011 (244-278)||(240038-240072)
[»] chr6 (6 HSPs)
chr6 (239-293)||(6284663-6284717)
chr6 (244-297)||(426512-426565)
chr6 (237-278)||(2820381-2820422)
chr6 (244-288)||(4118340-4118384)
chr6 (244-276)||(17422274-17422306)
chr6 (235-295)||(31384919-31384979)
[»] scaffold0036 (1 HSPs)
scaffold0036 (218-287)||(9977-10045)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 29364786 - 29365205
Alignment:
Q  16 attagctcttatctacctcttccttttgaaccaaaatctaaatcttaccaaacaaaacttgggcagtgtcattatggtttaaatcttactagcaatagaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||||||||||    
T  29364786 attagctcttatctacctcttccttttgaaccaaaatctaaatcttaccaaaaaaaacttgggtggtggcattatggtttaaatcttactagcaatagaa 29364885  T
Q  116 acagtgtgaaatgccaaattgggtattggtatttggtagttatcaacaaagtattttgggttatctatacctatgaaccacctacgtaaacacggtcaca 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||| |||||    
T  29364886 acagtgtgaaatgccaaatggggtattggtatttggtagttatcaacaaagtattttattttatctatacctatgaagcacctacgtaaacacgctcaca 29364985  T
Q  216 tggacacgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcggag--actagcactggttag 313  Q
     |||||||||||  |||||||| |   | |||||||| |||||||  ||||||| |||||||| ||| |||||||| || |||  |||||||||||| ||    
T  29364986 cggacacgacacccatacatgacaatggcaataatttaagaaaatggtataattaaatgtaatcacaggtgttagtatcagagacactagcactggtaag 29365085  T
Q  314 aaaagcaactgcaattaaggattcatcagatacatttgaccgcaattcttccgaatatatcaatgatcacagccacaatttaaaactgtttgttagcaat 413  Q
    | | ||||||||||| ||||   ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  29365086 acacgcaactgcaatcaaggccgcatcagatacatttgaccgcaattcttccaaatatatcaatgatcaaagccacaatttaaaactttttgttagcaat 29365185  T
Q  414 caacgtaaagctcagaaatt 433  Q
    | || |||||||||| ||||    
T  29365186 ctacttaaagctcaggaatt 29365205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 181 - 433
Target Start/End: Complemental strand, 30267637 - 30267381
Alignment:
Q  181 tatacctatgaaccacctacgtaaacacggtcacatggacacgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaatta 280  Q
    |||||||||||| |||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  30267637 tatacctatgaagcacctacgtaaacacgatcacacaaacacgacactgatacatgataccagtaataatttgagaaaataatataattaaatgtaatca 30267538  T
Q  281 caagtgttagtgtcggagactagcactggttagaaaagcaactgcaattaaggattcatca----gatacatttgaccgcaattcttccgaatatatcaa 376  Q
    |||||||||||||  ||||||||||||||| ||| |||||||||||||||||| | |||||    |||||||||||||||||||||||||||||||||||    
T  30267537 caagtgttagtgtgagagactagcactggtcagacaagcaactgcaattaaggctgcatcagatcgatacatttgaccgcaattcttccgaatatatcaa 30267438  T
Q  377 tgatcacagccacaatttaaaactgtttgttagcaatcaacgtaaagctcagaaatt 433  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  30267437 tgatcacagccacaatttaaaactttttgttagcaatcaacttaaagctcagaaatt 30267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 30267773 - 30267636
Alignment:
Q  16 attagctcttatctacctcttccttttgaaccaaaatctaaatcttaccaaacaaaacttgggcagtgtcattatggtttaaatcttactagcaatagaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30267773 attagctcttatctacctcttccttttgaaccaaaatctaaatcttaccaaacaaaacttgggcagtgtcattatggtttaaatcttactagcagtagaa 30267674  T
Q  116 acagtgtgaaatgccaaattgggtattggtatttggta 153  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30267673 acagtgtgaaatgccaaattgggtattggtatttggta 30267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 8420035 - 8420088
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||  ||||||||    
T  8420035 taataatttgaaaaaataacataattcaatgtaattacaagtgtcggtgtcgga 8420088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 32630786 - 32630733
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||||||||| |||||||| |||||||||| | |||| |||||||||    
T  32630786 taataatttgagaaaattatataattcaatgtaattatatgtgtcagtgtcgga 32630733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 15405106 - 15405063
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||    
T  15405106 taataatttgaaaaaatcatataattcaatgtaattacaagtgt 15405063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 14817041 - 14817103
Alignment:
Q  217 ggacacgacactgatacat-gataccagtaataatttgagaaaataatataattgaatgtaat 278  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||  ||| ||| ||||||||    
T  14817041 ggacacggcactgatacattgacaccagtaataatttgagaaaatgttattatttaatgtaat 14817103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 5616263 - 5616227
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaatta 280  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  5616263 taataatttgaaaaaataatatagttgaatgtaatta 5616227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 23012459 - 23012423
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaatta 280  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  23012459 taataatttgagaaaatcatataatttaatgtaatta 23012423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 5927391 - 5927338
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||    
T  5927391 taataatttgaaaaaatcatataatttaatgtaattacaagtgtcagtgtcgga 5927338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 17080937 - 17080898
Alignment:
Q  239 accagtaataatttgagaaaataatataattgaatgtaat 278  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  17080937 accaataataatttgagaaaataacataattgaatgtaat 17080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 21057791 - 21057842
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 295  Q
    ||||||||| ||||||||| |||||||||||||||  || ||||||||||||    
T  21057791 taataattttagaaaataacataattgaatgtaatcgcatgtgttagtgtcg 21057842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 43609869 - 43609826
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgt 43609826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 8203831 - 8203876
Alignment:
Q  246 ataatttgagaaaataatataattgaatgtaattacaagtgttagt 291  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||    
T  8203831 ataatttgagaaaatgacataagtgaatgtaatcacaagtgttagt 8203876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 32461514 - 32461465
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 293  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||| ||||    
T  32461514 taataatttgaaaaaatcacataatttaatgtaattacaagtgttggtgt 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 38078712 - 38078659
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||  ||||||||    
T  38078712 taataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcgga 38078659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 41877521 - 41877468
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||||||||| | |||||| | |||||||||||||||  ||||||||    
T  41877521 taataatttgagaaaattacataatttagtgtaattacaagtgtcggtgtcgga 41877468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 46348434 - 46348381
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||| ||||| |||||||| | |||||||||||||||  ||||||||    
T  46348434 taataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcgga 46348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 44247676 - 44247640
Alignment:
Q  239 accagtaataatttgagaaaataatataattgaatgt 275  Q
    |||||||||||||||||||||||  ||||||||||||    
T  44247676 accagtaataatttgagaaaatagaataattgaatgt 44247640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 51701266 - 51701317
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 295  Q
    ||||||||||| ||||| | |||||||| |||||||||||||||||||||||    
T  51701266 taataatttgaaaaaattacataattgagtgtaattacaagtgttagtgtcg 51701317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 20119953 - 20120003
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtc 294  Q
    ||||||||||||||||| | |||||| |||||||| ||| |||||||||||    
T  20119953 taataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgtc 20120003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 38847063 - 38847010
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||| ||||| |||| ||| | ||||||||||||||| |||||||||    
T  38847063 taataatttgaaaaaatcatattattcagtgtaattacaagtgtcagtgtcgga 38847010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 44797012 - 44796975
Alignment:
Q  245 aataatttgagaaaataatataattgaatgtaattaca 282  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  44797012 aataatttgagaaaataacataattcaatgtaattaca 44796975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 18783987 - 18784035
Alignment:
Q  246 ataatttgagaaaataatataattgaatgtaattacaagtgttagtgtc 294  Q
    ||||||||||||||| |  |||||||||||||||||| ||||| |||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgttggtgtc 18784035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 19230360 - 19230324
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaatta 280  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  19230360 taataatttgagaaaataacataattcaatgtaatta 19230324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 19262980 - 19262932
Alignment:
Q  239 accagtaataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    ||||||||||||||||||| || | ||||||||||||||| ||| ||||    
T  19262980 accagtaataatttgagaagatgacataattgaatgtaatcacatgtgt 19262932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 17568744 - 17568691
Alignment:
Q  234 atgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    |||| |||| ||||||||||||||||| | |||||| |||||||||||||||||    
T  17568744 atgacaccattaataatttgagaaaattacataatttaatgtaattacaagtgt 17568691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 21110515 - 21110461
Alignment:
Q  243 gtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    |||||||||||||||||| | |||||||||||||||   | ||||||||||||||    
T  21110515 gtaataatttgagaaaatgacataattgaatgtaatattatgtgttagtgtcgga 21110461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 8383265 - 8383318
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||||||||| |||||||| | |||||||| ||||||  ||||||||    
T  8383265 taataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcgga 8383318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 21419515 - 21419470
Alignment:
Q  235 tgataccagtaataatttgagaaaataatataattgaatgtaatta 280  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||    
T  21419515 tgataccgttaataatttaagaaaataatataattcaatgtaatta 21419470  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 21161550 - 21161514
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaatta 280  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  21161550 taataatttgaaaaaataatatagttgaatgtaatta 21161514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 28576723 - 28576767
Alignment:
Q  243 gtaataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    |||||||||||||||||| | | ||||||||||||||||| ||||    
T  28576723 gtaataatttgagaaaatgacaaaattgaatgtaattacatgtgt 28576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 21465420 - 21465471
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 295  Q
    ||||||||||| ||||| ||||||||  ||||||||||||||||| ||||||    
T  21465420 taataatttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcg 21465471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 6252544 - 6252495
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 293  Q
    |||||||||||||||||||| ||||| |||||||| |||  |||||||||    
T  6252544 taataatttgagaaaataatttaattaaatgtaatcacatttgttagtgt 6252495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 22596002 - 22596055
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||| | ||||||| |||||| | |||||||||||||||| ||||||||    
T  22596002 taataatttaaaaaaataacataattcagtgtaattacaagtgttggtgtcgga 22596055  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 2517093 - 2517160
Alignment:
Q  221 acgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgtta 289  Q
    |||||||||| | |||| ||| |||||||||||||||||| |  ||||||||||||| |||| ||||||    
T  2517093 acgacactgaca-atgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtta 2517160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 11815810 - 11815870
Alignment:
Q  218 gacacgacactgatacat-gataccagtaataatttgagaaaataatataattgaatgtaa 277  Q
    ||||||||||||| || | || |||| |||||||||||||||||  |||||||||||||||    
T  11815810 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 11815870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 12606880 - 12606844
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaatta 280  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  12606880 taataatttgagaaaatcatataattcaatgtaatta 12606844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 27733861 - 27733905
Alignment:
Q  250 tttgagaaaataatataattgaatgtaattacaagtgttagtgtc 294  Q
    ||||||||||| |||||||| |||||||| ||||||||| |||||    
T  27733861 tttgagaaaatgatataattcaatgtaatcacaagtgttggtgtc 27733905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 31753834 - 31753779
Alignment:
Q  224 acactgatacat-gataccagtaataatttgagaaaataatataattgaatgtaat 278  Q
    ||||| |||||| |||||||||| |||||||||||||| | |||||||||||||||    
T  31753834 acactaatacatcgataccagtagtaatttgagaaaattaaataattgaatgtaat 31753779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 21880160 - 21880213
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||||||||| | |||||| | |||||||||||||||  ||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgga 21880213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 25481910 - 25481963
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||| ||||| | |||||| | |||||||||||||||| ||||||||    
T  25481910 taataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcgga 25481963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 7058425 - 7058485
Alignment:
Q  235 tgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 295  Q
    |||||| | ||||||||||| ||||| || ||||| | |||||||||||||||| ||||||    
T  7058425 tgatacaactaataatttgaaaaaatcatgtaattcagtgtaattacaagtgttggtgtcg 7058485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 27945044 - 27945092
Alignment:
Q  239 accagtaataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    |||| ||||||||||||||||| | |||||| | |||||||||||||||    
T  27945044 accactaataatttgagaaaattacataattcagtgtaattacaagtgt 27945092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 1527887 - 1527934
Alignment:
Q  246 ataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 293  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||| ||||    
T  1527887 ataatttgagaaaataataaaattgaatgtaataacatgtgttggtgt 1527934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 3103575 - 3103540
Alignment:
Q  242 agtaataatttgagaaaataatataattgaatgtaa 277  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3103575 agtaataatttgagaaaataagataattgaatgtaa 3103540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 15098156 - 15098105
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 295  Q
    |||||||||||||||| ||  |||||||||||||||| |||||| |||||||    
T  15098156 taataatttgagaaaaaaaattaattgaatgtaattataagtgtcagtgtcg 15098105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 44605190 - 44605147
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||    
T  44605190 taataatttgagaaaataacataattcaatgtaattacatgtgt 44605147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 5526833 - 5526792
Alignment:
Q  235 tgataccagtaataatttgagaaaataatataattgaatgta 276  Q
    ||||||| |||||||||||||||||||| ||||||| |||||    
T  5526833 tgataccggtaataatttgagaaaataaaataattgtatgta 5526792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 18512187 - 18512143
Alignment:
Q  250 tttgagaaaataatataattgaatgtaattacaagtgttagtgtc 294  Q
    |||||||||||||||||||| |||||||| ||| |||| ||||||    
T  18512187 tttgagaaaataatataattcaatgtaatcacatgtgtcagtgtc 18512143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 240072 - 240038
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaat 278  Q
    |||||||||||||||||||||||||| ||||||||    
T  240072 taataatttgagaaaataatataattcaatgtaat 240038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 6284717 - 6284663
Alignment:
Q  239 accagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgt 293  Q
    |||| ||||||||||||||||| | |||||||||| |||| ||| ||||||||||    
T  6284717 accattaataatttgagaaaatgacataattgaatttaatcacatgtgttagtgt 6284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 426565 - 426512
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcgga 297  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||  ||||||||    
T  426565 taataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtcgga 426512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 2820422 - 2820381
Alignment:
Q  237 ataccagtaataatttgagaaaataatataattgaatgtaat 278  Q
    |||||| ||||||||||||||||||| |||| ||||||||||    
T  2820422 ataccaataataatttgagaaaataaaataaatgaatgtaat 2820381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 4118384 - 4118340
Alignment:
Q  244 taataatttgagaaaataatataattgaatgtaattacaagtgtt 288  Q
    ||||||||||| ||||| | |||||| ||||||||||||||||||    
T  4118384 taataatttgaaaaaatcacataattaaatgtaattacaagtgtt 4118340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 17422306 - 17422274
Alignment:
Q  244 taataatttgagaaaataatataattgaatgta 276  Q
    ||||||||||||||||| |||||||||||||||    
T  17422306 taataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 31384919 - 31384979
Alignment:
Q  235 tgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgttagtgtcg 295  Q
    |||||| | ||||||||||| ||||| | |||||| | ||||||||||||||| |||||||    
T  31384919 tgatacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcg 31384979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 9977 - 10045
Alignment:
Q  218 gacacgacactgatacatgataccagtaataatttgagaaaataatataattgaatgtaattacaagtgt 287  Q
    |||||||||| || |||| |||||  || |||||||||||||| ||||||||||||||||| ||| ||||    
T  9977 gacacgacacagacacat-ataccgttagtaatttgagaaaattatataattgaatgtaatgacatgtgt 10045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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