View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8794_low_2 (Length: 481)
Name: NF8794_low_2
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8794_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 51613620 - 51614073
Alignment:
| Q |
17 |
aaatattccattttcaattttgg-gtttttctctacgtatctaccaataaacaataaccaattccgttccnnnnnnnnnnnnttcaatttttccttctgg |
115 |
Q |
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| T |
51613620 |
aaatattccattttcaatttttgtgtttttctctacgtatctaccaataaacaataaccaattccgttccaaaaaataaaaattcaatttttccttctgg |
51613719 |
T |
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| Q |
116 |
ggttccgaattttcgatctgtgtgtttgtccaagctcaagtaagaattagtgggtcgtttttgtttttgtagatattagatacaagtgatgattttggat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51613720 |
ggttccgaattttcgatctgtgtgtttgtccaagctcaagtaagaattagtgggtcgtttttgtttttgtagatattatatacaagtgatgattttggat |
51613819 |
T |
|
| Q |
216 |
tcttcagggaaagatcaatgaagaattatgaatcggtggttttgagaacataatatgttgtatttgaagcaaccaaggttgattatgagtgttttgcatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51613820 |
tcttcagggaaagatcaatgaagaattatgaatcggtggttttgagaacataatatgttgtatttgaagcaaccaaggttgattatgagtgttttgcatt |
51613919 |
T |
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| Q |
316 |
gtgaattttggtgattttgtctgttgcatgctgttttggtagtttcccttgagccaccagatatagggaggctcgggggatctcaactcaacaatattat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51613920 |
gtgaattttggtgattttgtctgttgcatgctgttttggcagtttcccttgagccaccagagatagggaggctcgggggatctcaactcaacaatattat |
51614019 |
T |
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| Q |
416 |
catagcatagcatagttacgatggcttcttctgacaattttgaaccttcttctc |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51614020 |
catagcatagcatagttacgatggcttcttctgacaattttgaaccttcttctc |
51614073 |
T |
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