View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8794_low_4 (Length: 411)

Name: NF8794_low_4
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8794_low_4
NF8794_low_4
[»] chr6 (6 HSPs)
chr6 (109-402)||(11378678-11378975)
chr6 (230-285)||(16260662-16260717)
chr6 (227-285)||(8051014-8051072)
chr6 (227-285)||(26296245-26296303)
chr6 (229-270)||(862883-862924)
chr6 (233-285)||(31159123-31159175)
[»] chr5 (1 HSPs)
chr5 (227-285)||(32522574-32522632)
[»] chr1 (5 HSPs)
chr1 (230-288)||(49166651-49166709)
chr1 (230-285)||(8900833-8900888)
chr1 (230-285)||(32804291-32804346)
chr1 (231-285)||(5347008-5347062)
chr1 (229-261)||(39969805-39969837)
[»] chr8 (2 HSPs)
chr8 (229-285)||(24185570-24185626)
chr8 (80-149)||(2580348-2580417)
[»] chr7 (2 HSPs)
chr7 (230-285)||(2399739-2399794)
chr7 (229-285)||(21955381-21955436)
[»] chr2 (3 HSPs)
chr2 (226-285)||(12801085-12801144)
chr2 (229-285)||(11565039-11565095)
chr2 (233-285)||(33956332-33956384)
[»] chr4 (1 HSPs)
chr4 (230-288)||(52840307-52840364)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 109 - 402
Target Start/End: Original strand, 11378678 - 11378975
Alignment:
Q  109 atcatagatactgtgatgtgaacatgtcaatgaaaaacatactccctttggtcatgtatctaacttataaatgtatctaatttgtaaatgtgagagggta 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  11378678 atcataggtactgtgatgtgaacatgtcaatgaaaaacatactccctttggtcatttatctaacttataaatgtatctaatttgtaaatgtgacagggta 11378777  T
Q  209 gattaattattcaatgtaaaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaagagatgta-cccatcatcag 307  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11378778 cattaattattcaatgtaagatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaagagatgtaccccatcatcag 11378877  T
Q  308 attttagtttcaacaatgaatataatcactttaattaacaacaaaaatgaagaacc---cagagttttcactgatgactaataatctaacaccaaact 402  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||    
T  11378878 atttgagtttcaacaatgaatataatcactttaattagcaacaaaaatgaagaacctatcagagttttcactgatgactaataatctaacactaaact 11378975  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 16260662 - 16260717
Alignment:
Q  230 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    |||||||||||||| |||| |||||  ||||||||||||||| |||||||||||||    
T  16260662 tacattgaataattaatgtctctaacctataaatgtgactgaatacattaattatt 16260717  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 8051014 - 8051072
Alignment:
Q  227 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||| ||||||||||| |||||| |||| ||||||||||| | | |||||||||||||    
T  8051014 aaatatattgaataattaatgtatataatctataaatgtgattaaatacattaattatt 8051072  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 26296245 - 26296303
Alignment:
Q  227 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||| ||||||| |||||| |||| ||||||||||||||  ||| |||||||||    
T  26296245 aaatacattaaataattaatgtatttaatctataaatgtgactgtatacgttaattatt 26296303  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 862924 - 862883
Alignment:
Q  229 atacattgaataattcatgtatctaatttataaatgtgactg 270  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  862924 atacattgaataattaatgtatctaacctataaatgtgactg 862883  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 31159175 - 31159123
Alignment:
Q  233 attgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||| | ||||||||||  |||||||||||| || |||||||||||||    
T  31159175 attgaataactaatgtatctaacatataaatgtgaccgaatacattaattatt 31159123  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 32522632 - 32522574
Alignment:
Q  227 aaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||||||||||| |||||||| || ||||||||||||||  |||||||||||||    
T  32522632 aaatacattgaataattaatgtatctgatctataaatgtgactgcatacattaattatt 32522574  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 49166709 - 49166651
Alignment:
Q  230 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaa 288  Q
    |||||||||||||| ||||||||||  ||||||||||||||  ||||||||||||||||    
T  49166709 tacattgaataattaatgtatctaacctataaatgtgactggatacattaattatttaa 49166651  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 8900833 - 8900888
Alignment:
Q  230 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    |||||||||||||| ||||||||||  |||||||||||| |  |||||||||||||    
T  8900833 tacattgaataattaatgtatctaacctataaatgtgaccggatacattaattatt 8900888  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 32804346 - 32804291
Alignment:
Q  230 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    |||||||||| ||| |||||||||   ||||||||||||||| |||||||||||||    
T  32804346 tacattgaatcattaatgtatctatcatataaatgtgactgaatacattaattatt 32804291  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 5347062 - 5347008
Alignment:
Q  231 acattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||||||| || |||||||| ||||||||||| ||  |||||||||||||    
T  5347062 acattgaataattaatatatctaatatataaatgtgaatggatacattaattatt 5347008  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 39969805 - 39969837
Alignment:
Q  229 atacattgaataattcatgtatctaatttataa 261  Q
    ||||||||||||||| |||||||||||||||||    
T  39969805 atacattgaataattgatgtatctaatttataa 39969837  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 24185570 - 24185626
Alignment:
Q  229 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||||||||| || |||||||  ||||||||||||||  |||||||||||||    
T  24185570 atacattgaataattaatatatctaacctataaatgtgactggatacattaattatt 24185626  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 2580417 - 2580348
Alignment:
Q  80 cttttcaccgtgtctgccacaaatggtagatcatagatactgtgatgtgaacatgtcaatgaaaaacata 149  Q
    ||||||||||||| ||   |||||| |||||||||| ||||||||| |||| |||||||| | |||||||    
T  2580417 cttttcaccgtgtgtgttgcaaatgatagatcataggtactgtgatatgaatatgtcaattagaaacata 2580348  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 2399739 - 2399794
Alignment:
Q  230 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||||| || |||||||||| ||||||||||||| |  |||||||||||||    
T  2399739 tacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattatt 2399794  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 21955436 - 21955381
Alignment:
Q  229 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||||||||| |||||||| |  ||||||||||||||  |||||||||||||    
T  21955436 atacattgaataatt-atgtatctgacatataaatgtgactggatacattaattatt 21955381  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 12801085 - 12801144
Alignment:
Q  226 aaaatacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||| | || ||||||||||    
T  12801085 aaaattcattgaataattaatgtatttaatctataaatgtgactaaatatattaattatt 12801144  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 11565039 - 11565095
Alignment:
Q  229 atacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||||||||| ||||| || || ||||||||||||||  |||||||| ||||    
T  11565039 atacattgaataattaatgtacctgatctataaatgtgactggatacattaaatatt 11565095  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 33956384 - 33956332
Alignment:
Q  233 attgaataattcatgtatctaatttataaatgtgactgagtacattaattatt 285  Q
    ||||||||||| |||||||||| |||||||| |||| |  |||||||||||||    
T  33956384 attgaataattaatgtatctaacttataaatatgaccggatacattaattatt 33956332  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 52840307 - 52840364
Alignment:
Q  230 tacattgaataattcatgtatctaatttataaatgtgactgagtacattaattatttaa 288  Q
    |||||| ||||||| ||||||||||  |||||||||||| || ||||||||||||||||    
T  52840307 tacattaaataattaatgtatctaacatataaatgtgaccga-tacattaattatttaa 52840364  T

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