View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8794_low_5 (Length: 343)
Name: NF8794_low_5
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8794_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 8420570 - 8420876
Alignment:
| Q |
17 |
tcaatttattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagca |
116 |
Q |
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| T |
8420570 |
tcaatttattctacttatttgactatgagtgtctccttttgttgctgagtcaaaacactactctcctattaatcacgttgctgttgtttacttattagca |
8420669 |
T |
|
| Q |
117 |
tgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctagatttcatttc |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
8420670 |
tgccttcctaaagataaggaatcca-cctcaactacttcctatagttatagttatgctatgagt----gactcaattaaaataaacctagttttcatttc |
8420764 |
T |
|
| Q |
217 |
tttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagactgaga |
316 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8420765 |
tttattattctgattttgttcaaaagggacggttatttgtatatgtatctacctataataattt-------gataacacacaattaggaagagactgaga |
8420857 |
T |
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| Q |
317 |
acatttcctactctctgct |
335 |
Q |
| |
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||||||||||||||||||| |
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| T |
8420858 |
acatttcctactctctgct |
8420876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 49171733 - 49171545
Alignment:
| Q |
17 |
tcaatttattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
49171733 |
tcaatttattctacttatttgactatgagtgactccttttgttgctgagttaaaacactactctcctattagtcacgttgctcttatttacttattagca |
49171634 |
T |
|
| Q |
117 |
tgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctag |
206 |
Q |
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| T |
49171633 |
tgccttcctaaagataaggaatcca-cctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctag |
49171545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 49171361 - 49171239
Alignment:
| Q |
213 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171361 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
49171262 |
T |
|
| Q |
313 |
gagaacatttcctactctctgct |
335 |
Q |
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| T |
49171261 |
gagaacatttcctactctctgct |
49171239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 21492622 - 21492315
Alignment:
| Q |
23 |
tattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagcatgcctt |
122 |
Q |
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||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||| |
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| T |
21492622 |
tattctacttatttgaccatgagtgtccccttttgttgctgagtcaaaacactactctcttgttagtcacgttgctgttgtttacttattagtatgcctt |
21492523 |
T |
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| Q |
123 |
cctaaagataaggaatccacc--------ctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctagatttcatt |
214 |
Q |
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||||||||||||||||||||| |||||||| ||| ||||||||||||| |||| | |||||||||||||||| ||| |||| || |
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| T |
21492522 |
cctaaagataaggaatccacctcccatggttcaactacctcc------tatagttatgctatgagt----ggctcaattaaaataaacttagttttcttt |
21492433 |
T |
|
| Q |
215 |
tctttattattctga-ttttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagactg |
313 |
Q |
| |
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|||||||| |||||| |||||||||||| || ||||| || || |||||| |||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
21492432 |
tctttatttttctgatttttgttcaagaggggcggttttt----catatatctagctataataattttcctagggataacatacaattaggaagagacca |
21492337 |
T |
|
| Q |
314 |
agaacatttcctactctctgct |
335 |
Q |
| |
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| ||| ||||||||| |||||| |
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| T |
21492336 |
ataacgtttcctactatctgct |
21492315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 45232599 - 45232677
Alignment:
| Q |
190 |
aattaaaataaacctagatttcatttctttattatt-ctgattttgttcaagaaggacggttatttgtatatgtatcta |
267 |
Q |
| |
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|||||||| |||| ||| |||| |||||||||| || |||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
45232599 |
aattaaaacaaacatagttttcttttctttatttttgctgattttgttcaagagggacggttatatatatacgtatcta |
45232677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 8730253 - 8730306
Alignment:
| Q |
28 |
tacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctc |
81 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
8730253 |
tacttatttgactatcagtgttctcttttgttgctgagtcaaaacactactctc |
8730306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 9082140 - 9082193
Alignment:
| Q |
28 |
tacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctc |
81 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
9082140 |
tacttatttgactatcagtgttctcttttgttgctgagtcaaaacactactctc |
9082193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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