View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8794_low_6 (Length: 309)
Name: NF8794_low_6
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8794_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 3702530 - 3702251
Alignment:
| Q |
14 |
aattctacatgctcgtaaaaaggaaaaatgtcaaccctcgtaacatggtcaaagggttgtttcaaacacttgatcaaataatccatatcatccaaatgca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702530 |
aattctacatgctcgtaaaaaggaaaaatgtcaaccgtcgtaacatggtcaaagggctgtttcaaacacttgatcaaataatccatatcatccaaatgca |
3702431 |
T |
|
| Q |
114 |
aggtagtagcggtccatcgggataaaggcatcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttgctaccattgtacttcgaaag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3702430 |
aggtagtagcggtccatcgggataaaggcatcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttgccaccattgtacttcgaaag |
3702331 |
T |
|
| Q |
214 |
gctactgaaaatcaccctttgaatgttgaggttcaggcccgtccccatttgatcattgaacaaatttctggtggcaaagt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702330 |
gctactgaaaatcaccctttgaatgttgaggttcaggcccgtccccatttgatcattgaacaaatttctggtggcaaagt |
3702251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 3717240 - 3717062
Alignment:
| Q |
14 |
aattctacatgctcgtaaaaaggaaaaatgtcaaccctcgtaacatggtcaaagggttgtttcaaacacttgatcaaataatccatatcatccaaatgca |
113 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
3717240 |
aattctacttgctcgtaaaaagggaaaatgccaaccctcgtaacgtggtcaaagggctgtttcaaacactcgatcaaataatccatatcatccaactgca |
3717141 |
T |
|
| Q |
114 |
aggtagtag-cggtccatcgggataaaggcatcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttg |
193 |
Q |
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| T |
3717140 |
aggtagtggccagttcatcaggataaaggcatactc--ctaccagctcttcctgcaatttgctggaacaataagaattttg |
3717062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 3705854 - 3705689
Alignment:
| Q |
14 |
aattctacatgctcgtaaaaaggaaaaatgtcaaccctcgtaacatggtcaaaggg-ttgtttcaaacacttgatcaaataatccatatc-------atc |
105 |
Q |
| |
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|||||||| |||||||||||| |||||||| ||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||| ||| |
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| T |
3705854 |
aattctacttgctcgtaaaaaagaaaaatgccaaccctcgtaacgtggtcaaagggcttgttccaaacacacgatcaaataatccatatcatccaaaatc |
3705755 |
T |
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| Q |
106 |
caaatgcaaggtagtagc-ggtccatcgggataaaggcatcctcttctaccagctcttcctgcaat |
170 |
Q |
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| T |
3705754 |
caaatgcaaggtagtagcaagtccatcaggataaaggcatcctcttctatcagatcttcctgcaat |
3705689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 3708561 - 3708327
Alignment:
| Q |
23 |
tgctcgtaaaaaggaaaaatgtcaaccctcgtaacatggtcaaagggttgtttcaaacacttgatcaaataatccatatcatccaaatgcaaggtagtag |
122 |
Q |
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||||| |||||||||||| | ||||| | ||| |||| ||||||| | |||||||||||| ||||| ||| || |||||| ||||||||||| || | |
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| T |
3708561 |
tgctcataaaaaggaaaag-gccaaccttagtagcatgatcaaagg-tggtttcaaacactctatcaagtaaatcaaatcatctaaatgcaaggttgtgg |
3708464 |
T |
|
| Q |
123 |
cg-gtccatcgggataaaggcatcctcttctaccagctcttcctgcaatttgctgg----aacagta-----agaattttgctaccattgtacttcgaaa |
212 |
Q |
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| |||||||| |||||||||||||||||| ||| ||||||| ||||| | || | | ||||| ||||||||| ||||||||||||||||| |
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| T |
3708463 |
tgagtccatcgagataaaggcatcctcttcaaccggctcttcttgcaaataacttgtgacaccagtacacgaagaattttgtcaccattgtacttcgaaa |
3708364 |
T |
|
| Q |
213 |
ggctactgaaaatcaccctttgaatgttgaggttcag |
249 |
Q |
| |
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||||| |||||||||||||| ||||||||| ||||| |
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| T |
3708363 |
ggctattgaaaatcacccttcaaatgttgagattcag |
3708327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 3713791 - 3713740
Alignment:
| Q |
142 |
catcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttg |
193 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
3713791 |
catcctcttccaccagcacttcctgcaatttgctggaacagtaagaattttg |
3713740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 3520150 - 3520411
Alignment:
| Q |
14 |
aattctacatgctcgtaaaaaggaaaaatgtcaaccctcgtaacatggtcaaagggttgtttcaaacacttgatcaaataatccatatcatccaaatgca |
113 |
Q |
| |
|
||||| || ||||| ||| ||||||||| | ||||| || ||||| |||||||||||||||||||||| |||||| ||||||| ||| || ||||||| |
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| T |
3520150 |
aattcaacctgctcataataaggaaaaaggccaaccttctccacatgatcaaagggttgtttcaaacactcgatcaagtaatccaaatcctctaaatgca |
3520249 |
T |
|
| Q |
114 |
aggtagtagcg-gtccatcgggataaaggcatcctcttctaccagctcttcctgcaattt--------------gctggaacagtaagaattttgctacc |
198 |
Q |
| |
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| ||||| ||| ||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||| |||||||||| ||| |
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| T |
3520250 |
aagtagtggcgagtccatcgggataaacacatcctcttcgaccagctcttccggcaatttgcttaacctgtgacgctggaacaggaagaattttgtcacc |
3520349 |
T |
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| Q |
199 |
attgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcaggcccgtcccca |
260 |
Q |
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|||||||| |||||| || | |||||||||||| ||||||| ||||| |||||| |||||| |
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| T |
3520350 |
gttgtactttgaaaggttattaaaaatcacccttcgaatgttaaggttaaggcccatcccca |
3520411 |
T |
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