View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8794_low_7 (Length: 270)
Name: NF8794_low_7
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8794_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 32531888 - 32532129
Alignment:
| Q |
9 |
tggtgttcgcacaactaatttgttacggttacaaatagctggtcttatctcccatgacattattatatatgctgttggcnnnnnnntgaatctaactgat |
108 |
Q |
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| T |
32531888 |
tggtgttggcacaactaatttgttaca-ttacaaatagctgatcttatctcccatgacattattatatatgctgttggcaaaaaa-tgaatctaactgat |
32531985 |
T |
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| Q |
109 |
aaatttcacttttcctatgatcaacctttcccaattcacaaagtcacatcaagagaatgttataggtaacaacattagaaatatcatgttcaacttcttc |
208 |
Q |
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| T |
32531986 |
aaatttcgcttttcctatgatcaacctttcccagttcacaaagtcacatcaagagaatgttataggtaacaacattagaaatatcatgttcaacttcttc |
32532085 |
T |
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| Q |
209 |
atcaagcaatccatgtgcattttcaactgaaaaattacaattaa |
252 |
Q |
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| T |
32532086 |
atcaagcaatccatgtgcattttcaacataacatttacaattaa |
32532129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 32523488 - 32523725
Alignment:
| Q |
9 |
tggtgttcgcacaactaatttgttacggttacaaatagctggtcttatctcccatgacattattatatatgctgttggcnnnnnnntgaatctaactgat |
108 |
Q |
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| T |
32523488 |
tggtgttcgcacaactaatttgttacggttacaaatagctggtcttatctcccatgacattattat----gctgttggcaaaaaa-tgaatctaactgat |
32523582 |
T |
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| Q |
109 |
aaatttcacttttcctatgatcaacctttcccaattcacaaagtcacatcaagagaatgttataggtaacaacattagaaatatcatgttcaacttcttc |
208 |
Q |
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| T |
32523583 |
aaatttcacttttcctatgatcaaccttttc-agttcacaaagtcacatcaagagaatgttataggtaacaacattagaaatgtcatgtttaacttcttc |
32523681 |
T |
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| Q |
209 |
atcaagcaatccatgtgcattttcaactgaaaaattacaattaa |
252 |
Q |
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| T |
32523682 |
atcaagcaatccatgtgcattttcaacagaaaaattataattaa |
32523725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 252
Target Start/End: Original strand, 32527820 - 32527972
Alignment:
| Q |
98 |
atctaactgataaatttcacttttcctatgatcaacctttcccaattcacaaagtcacatcaagagaatgttataggtaacaacattagaaatatcatgt |
197 |
Q |
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|||| ||||||||| ||||||||| |||||| ||||||||| | ||||||| |||| ||||| ||||||||||| ||| |||||||||||| | ||||| |
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| T |
32527820 |
atcttactgataaaattcactttta-tatgattaacctttcctagttcacaaggtcatatcaaaagaatgttatatgtagcaacattagaaa-accatgt |
32527917 |
T |
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| Q |
198 |
tcaacttcttcatcaagcaatccatgtgcattttcaactgaaaaattacaattaa |
252 |
Q |
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|||||| ||||||||| |||||||| |||||| | | | ||||| |||||||||| |
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| T |
32527918 |
tcaactacttcatcaaacaatccatatgcattatgagcagaaaatttacaattaa |
32527972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 29272681 - 29272590
Alignment:
| Q |
131 |
aacctttcccaattcacaaagtcacatcaagagaatgttataggtaacaacattagaaatatcatgttcaacttcttcatcaagcaatccat |
222 |
Q |
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||||||||||| ||||| ||| ||| |||| ||||||||||| ||||| ||||| | ||| ||||||||||| | ||||||| |||||||| |
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| T |
29272681 |
aacctttcccagttcaccaagccacttcaaaagaatgttatacgtaacgacattggtgataccatgttcaactgcctcatcaaacaatccat |
29272590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 29274222 - 29274193
Alignment:
| Q |
100 |
ctaactgataaatttcacttttcctatgat |
129 |
Q |
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| T |
29274222 |
ctaactgataaatttcacttttcctatgat |
29274193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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