View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8794_low_8 (Length: 262)
Name: NF8794_low_8
Description: NF8794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8794_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 30267340 - 30267079
Alignment:
| Q |
1 |
ctcccctaaccaattgtgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30267340 |
ctcccctaaccaattgtgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcctaacgaatcaccaacaaacat |
30267241 |
T |
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| Q |
101 |
cacactttttcctttcatcttcaacaaaaactcaactccattgaacctaccattacaaaac-----------accatcattcaaattatactaagcaacc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
30267240 |
cacactttttcctttcatcttcaacaaaaactcaactccattgaacctgccattacaaaacaccacaaaaacaccatcattcaaattatactaagcaacc |
30267141 |
T |
|
| Q |
190 |
acacactacattatcttaaaaacacaatattttgctatgaagcacaaacccaaacacgaacacca |
254 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30267140 |
acacacta---tatcttaaaaacactatattttgctatgaagcacaaacccaaacacgaacacca |
30267079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 29365246 - 29365395
Alignment:
| Q |
1 |
ctcccctaaccaattgtgtctccacattaggtgctgcagcagatatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacat |
100 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29365246 |
ctcccctaaccaattctgtctccacacgaggtgctgcagcagatatcatataaatcaaagactgccattggttccttcctaacgaatcaccaacaaacat |
29365345 |
T |
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| Q |
101 |
cacactttttcctttcatcttcaacaaaaactcaactccattgaacctac |
150 |
Q |
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|||| |||||||||||||||||| || |||||||||||| |||||||||| |
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| T |
29365346 |
cacattttttcctttcatcttcatcagaaactcaactccgttgaacctac |
29365395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 25959326 - 25959220
Alignment:
| Q |
43 |
atatcatacaaatcaaagactgccattggttccttcccaacgaatcaccaacaaacatcacactttttcctttcatcttcaacaaaaactcaactccatt |
142 |
Q |
| |
|
|||||||||||||||| || | |||||| ||||| ||||| ||||||||||||||||| | ||||||||| ||||| || || ||||| ||||||||| |
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| T |
25959326 |
atatcatacaaatcaatgattcccattgattcctccccaaagaatcaccaacaaacattatactttttcccttcattcccatcagaaactgaactccatt |
25959227 |
T |
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| Q |
143 |
gaaccta |
149 |
Q |
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||||||| |
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| T |
25959226 |
gaaccta |
25959220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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