View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8795_low_1 (Length: 532)
Name: NF8795_low_1
Description: NF8795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8795_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Original strand, 37740154 - 37740672
Alignment:
| Q |
13 |
gattatactctgaacagcattgatagatttcacaatgaatgctttgaatccagccattttgatcacatattcccattctttgagtgtcctttctttgcca |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37740154 |
gattacactctgaacagcattgatagatttcacaatgagtgctttgaatccagccattttgatcacatattcccattctttgagtgtcctttctttgcca |
37740253 |
T |
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| Q |
113 |
atgtttgtgtgtgccatcatcaccatgtctaacattaaccctacgtctttatacttgttgtgttttccttctccttcttcaatcactgcttccacaataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37740254 |
atgtttgtgtgtgccatcatcaccatgtctaacattaaccctacgtctttatacttgttgtgttttccttctccttcttcaatcactgcttccacaataa |
37740353 |
T |
|
| Q |
213 |
taacttttccattttcttttggaattgcttctctacaattcttcaagatttcgatgcactcttcatccccccaatcatgcaaaacccactacatttcaat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37740354 |
taacttttccattttcttttggaattgcttctctacagttctttaagatttggatgcactcttcatccccccaatcatgcaaaacccactgcatttcaat |
37740453 |
T |
|
| Q |
313 |
tgatatataattcaatcaaatcatcaccaaatcacatannnnnnnaatcaaactacatcatacacttcaattagttggtatattggttcactttattgat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37740454 |
tgatatataattcaatcaaatcatcaccaaatcacatatttttttaatcaaactacatcatacacttcaattagttggtatattggttccctttattgat |
37740553 |
T |
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| Q |
413 |
aa-------------atttattacatatgtaggcctggtgcaaattttaatataagtattattaaagttcgtaataatacttcaataaaattgacagttt |
499 |
Q |
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| T |
37740554 |
aaagaaattaacaatatttattacatatgtaggcctggtgcaaattttaatataagtattattaaagttcgtaataatacttcaataaaattgacaattt |
37740653 |
T |
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| Q |
500 |
tgatttaagtgttattttt |
518 |
Q |
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||||||||||||||||||| |
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| T |
37740654 |
tgatttaagtgttattttt |
37740672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 26 - 296
Target Start/End: Original strand, 8679372 - 8679636
Alignment:
| Q |
26 |
acagcattgatagatttcacaatgaatgctttgaatccagccattttgatcacatattcccattctttgagtgtcctttctttgccaatgtttgtgtgtg |
125 |
Q |
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||||||||||||||||||||| || || | || ||||||||||||||||||||||||||||| ||||| || || | |||||||||| ||| ||||||| |
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| T |
8679372 |
acagcattgatagatttcacagtgcatcccttaaatccagccattttgatcacatattcccactctttcagggtacgttctttgccatagttagtgtgtg |
8679471 |
T |
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| Q |
126 |
ccatcatcaccatgtctaacattaaccctacgtctttatacttgttgtgttttccttctccttcttcaatcactgcttccacaataataacttttccatt |
225 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
8679472 |
ccatcatcaccatgtctaacactaaccctacatctttatac---ttgtggtttc---ctccttcttcaatcactgcttccacgataattactcttccatt |
8679565 |
T |
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| Q |
226 |
ttcttttggaattgcttctctacaattcttcaagatttcgatgcactcttcatccccccaatcatgcaaaa |
296 |
Q |
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|| |||||||| ||||| |||| |||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
8679566 |
gtcatttggaatagcttccttacatttcttcaatatttggatgcattcttcatccccccaatcatgcaaaa |
8679636 |
T |
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