View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8795_low_2 (Length: 459)
Name: NF8795_low_2
Description: NF8795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8795_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 51877256 - 51877697
Alignment:
| Q |
15 |
atatgtactcaacaaatgaatcaatccattcaaatggaattatcannnnnnnaatttccctactttatgaaaatcattgattggaaaagttaagccagct |
114 |
Q |
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| T |
51877256 |
atatgtactcaacaaatgaatcaatccattcaaatggaattatcatttttttaatttccctactttatgaaaatcattgattggaaaagttaagccagct |
51877355 |
T |
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| Q |
115 |
tccacaactaataatcatcctttcctcttgttaggtcgtaaaggaaacctaaat-atcatggaattatcacgtgtaccgtatgtttggtatcatggtagt |
213 |
Q |
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| T |
51877356 |
tccacaactaataatcatcctttcctcttgttgggtcgtaaaggaaacctaaaacatcatggaattatcacgtgtaccgtatgtttggtatcacggtagt |
51877455 |
T |
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| Q |
214 |
tatctctaaattacgacagccaaccatgattattcaaaagctacaatttgtagcttcttcaaaataataatagatcaccgtgattctggcatactcatcg |
313 |
Q |
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| T |
51877456 |
tatctttgaattacgacagccaaccatgattattcaaaagctacaatttgtagcttcttcaaaataatagtggatcaccgtgattctggcatactcatcg |
51877555 |
T |
|
| Q |
314 |
tgatatcatacatacatataggctaagagcaataaacaactaagtttcacacaacaagtttgttcaaaattttaaaacatttatatttgagtcttttcac |
413 |
Q |
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| T |
51877556 |
tgatatcatacatacatataggctaagagcaataaacaactaagtttcacccaacaaatttgttcaaaattttaaaacatttatatttgagtcttttcac |
51877655 |
T |
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| Q |
414 |
aacactcataatttgttaaatgttatgtgagtataatctacc |
455 |
Q |
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| T |
51877656 |
aacactcataatttgttaaatgttatgtgattataatttacc |
51877697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 44167561 - 44167630
Alignment:
| Q |
240 |
tgattattcaaaagctacaatttgtagcttcttcaaaataataatagatcaccgtgattctggcatactc |
309 |
Q |
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| T |
44167561 |
tgatttttcaaaaactacataatgtagcttctacaaaattatgatggatcaccgtgattctgacatactc |
44167630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 5277032 - 5276964
Alignment:
| Q |
238 |
catgattattcaaaagctacaatttgtagcttcttcaaaataataatagatcaccgtgattctggcata |
306 |
Q |
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| T |
5277032 |
catgatttttcaaaaaatacactttgtagtttctacaaaatcatgatggatcaccgtgattctgacata |
5276964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 42910517 - 42910451
Alignment:
| Q |
240 |
tgattattcaaaagctacaatttgtagcttcttcaaaataataatagatcaccgtgattctggcata |
306 |
Q |
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| T |
42910517 |
tgatttttcaaaagctgcactttgtagcttctacaaaatcacaatggatcaccgtgattttggcata |
42910451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 11669523 - 11669437
Alignment:
| Q |
241 |
gattattcaaaagctacaatttgtagcttcttcaaaataataatagatcaccgtgattctggcatactcatcgtgatatcatacata |
327 |
Q |
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| T |
11669523 |
gatttttcaaaagctacacttcgtagcttcagcaaaatcatggtggatcatcgtgactctggcacacccatcgtgatatcaaacata |
11669437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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