View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8795_low_3 (Length: 440)
Name: NF8795_low_3
Description: NF8795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8795_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 33983529 - 33983825
Alignment:
| Q |
18 |
taaatgatctcataagacctcttctttgaatgacttctgtat-atgataaaactcctccctttctttgaatagctttccaaccttttctaatacttgttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33983529 |
taaatgatctcataagacctcttctttgaatgacttctgtatcatgataaaactcctccctttctttgaatagctttccaaccttttctaatacttgttt |
33983628 |
T |
|
| Q |
117 |
atgtaagttgctctagtattatagtatataattacaattcttttgcaatcttttgtataactacatgatttgtattagctattctcaatcaataaattca |
216 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33983629 |
atgtaagtttctctagtattgtagtatataattacaattcttttgcaatcttttgtataactacatgatttgtattagctattctcaatcaataaattca |
33983728 |
T |
|
| Q |
217 |
a--annnnnnnnnnnnaattttctcattctatagannnnnnnacatgataataaagctagtaaatccttctatatggttctccaactcttaaaaagc |
311 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33983729 |
atttttttttttttttaattttctcattctatagatttttttacatgataataaagctagtaaatccttctatatggttctccaactcttaaaaagc |
33983825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 33983870 - 33983937
Alignment:
| Q |
355 |
gagttcttcaatcatagataaaatttggcaaaaagttgtcgatcctccaaacttgtcaaacatggtct |
422 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33983870 |
gagttcttcaatcatagatcaaatttggcaaaaagttgtcgatcctccaaacttgtcaaacatggtct |
33983937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 33953976 - 33954026
Alignment:
| Q |
167 |
ttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33953976 |
ttttgtataaatacatgatttgtattagctattctcaatcaataaattcaa |
33954026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 33961279 - 33961331
Alignment:
| Q |
165 |
tcttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33961279 |
tcttttgtataaatacatgatttgtattagctattctcaatcaatatattcaa |
33961331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 33976574 - 33976626
Alignment:
| Q |
165 |
tcttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33976574 |
tcttttgtataaatacatgatttgtattagctattctcaatcaatatattcaa |
33976626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 33993496 - 33993546
Alignment:
| Q |
167 |
ttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33993496 |
ttttgtataaatacatgatttgtattagctattctcaatcaatatattcaa |
33993546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 8275456 - 8275358
Alignment:
| Q |
75 |
cctttctttgaatagctttccaaccttttctaatacttgtttatgtaagttgctctagtattatagtatataattacaattcttttgcaatcttttgta |
173 |
Q |
| |
|
|||| |||||||| || ||||||||||| ||| |||||| | ||||| ||||||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
8275456 |
ccttcctttgaatggcattccaacctttcctagcacttgtatctgtaaagtgctctagtattatagtatataactaaaattcttttgtaatcttttgta |
8275358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University