View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8795_low_5 (Length: 330)
Name: NF8795_low_5
Description: NF8795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8795_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 24087083 - 24086770
Alignment:
| Q |
1 |
tcggtctctgtgatgattacaagtctgagggcgtatgcaatttatctgcatcttcaagcacaggccagggctcatgctgcagcagcctctgggttacttg |
100 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24087083 |
tcggtctttgtgatggttacaagtctgagggcgtatgcaatttatctgcatcttcaatcacaggccagggctcatgctgcagcagcctctgggttacttg |
24086984 |
T |
|
| Q |
101 |
gccatgctgaattacgagttcacgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgaccgaga |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24086983 |
gccatgctgaattacgagttcgcgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgaccgaga |
24086884 |
T |
|
| Q |
201 |
ttttaatgagataggtattatgcttctgaattgtacttttggatgtgtaacttttcatattcatttaagttgacaatgccaaaagaaaatgcc-ctttgt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24086883 |
ttttaatgagataggtattatgcttctgaattgtacttttggatgtgtaacttttcatattcatttaagttgacaatgccaaaagaaaatgcctttttgt |
24086784 |
T |
|
| Q |
300 |
tcatgtatacattt |
313 |
Q |
| |
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|||||||||||||| |
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| T |
24086783 |
tcatgtatacattt |
24086770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 24091145 - 24090832
Alignment:
| Q |
1 |
tcggtctctgtgatgattacaagtctgagggcgtatgcaatttatctgcatcttcaagcacaggccagggctcatgctgcagcagcctctgggttacttg |
100 |
Q |
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|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24091145 |
tcggtctttgtgatggttacaagtctgagggcgtatgcaatttatctgcatcttcaatcacaggccagggctcatgctgcagcagcctctgggttacttg |
24091046 |
T |
|
| Q |
101 |
gccatgctgaattacgagttcacgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgaccgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24091045 |
gccatgctgaattacgagttcacgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgaccgaaa |
24090946 |
T |
|
| Q |
201 |
ttttaatgagataggtattatgcttctgaattgtacttttggatgtgtaacttttcatattcatttaagttgacaatgccaaaagaaaatgcc-ctttgt |
299 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24090945 |
ttttaatgagataggtattatacttctgaattgcacttttggatgtgtaacttttcatattcatttaagttgacaatgccaaaagaaaatgcctttttgt |
24090846 |
T |
|
| Q |
300 |
tcatgtatacattt |
313 |
Q |
| |
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|||||||||||||| |
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|
| T |
24090845 |
tcatgtatacattt |
24090832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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