View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8795_low_9 (Length: 237)
Name: NF8795_low_9
Description: NF8795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8795_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 42623422 - 42623631
Alignment:
| Q |
10 |
agaagcagagaagaagtcggggcatggtaattcgtctttagaggcgccgcgacaaatggcagcccaagtagtttggaagagactgccggaacaaccgtcg |
109 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42623422 |
agaagcagaaaagaagtcggggcatggtaattcatctttagaggtgccgcgacaaatggcagcccaaatagtttggaagagactgccggaacaaccgtcg |
42623521 |
T |
|
| Q |
110 |
aggagggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42623522 |
aggagggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagt |
42623621 |
T |
|
| Q |
210 |
gcatcttatt |
219 |
Q |
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|||||||||| |
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| T |
42623622 |
gcatcttatt |
42623631 |
T |
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