View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8796_high_1 (Length: 671)
Name: NF8796_high_1
Description: NF8796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8796_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 151 - 472
Target Start/End: Original strand, 45540505 - 45540826
Alignment:
| Q |
151 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagagagttcattcaatgagaaaacaaatacaaataacagt |
250 |
Q |
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| T |
45540505 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagaaagttcattcaatgagaaaacaaatacaaataacagt |
45540604 |
T |
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| Q |
251 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
350 |
Q |
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| T |
45540605 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
45540704 |
T |
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| Q |
351 |
aaggacaacagggagtggatgatactatccatacggggacatcatcttttccaactttagaaccattaaaccaagaacaaacgtgcgcttctataaatgt |
450 |
Q |
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| T |
45540705 |
aaggacaacagggagtggatgatactatccatacagggacatcatcttttccaactttagaatcattaaaccaagaacaaacgtgcgcttctataaatgt |
45540804 |
T |
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| Q |
451 |
cacaggtaatgcaaatcaagat |
472 |
Q |
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| T |
45540805 |
cacaagtaatgcaaatcaagat |
45540826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 465 - 658
Target Start/End: Original strand, 45540897 - 45541090
Alignment:
| Q |
465 |
atcaagattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgccgat |
564 |
Q |
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| T |
45540897 |
atcaacattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgccgat |
45540996 |
T |
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| Q |
565 |
acaattgatggagcgtccaagtgaaaatgtgactaatgcccaatatgtctttccatctcatgtatttgctagaaacaatacaaatgccccagta |
658 |
Q |
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| T |
45540997 |
acaattgatggagcgtccaagtgaaaatgtgactaatgcccaatatgtctttccatctcatgtatttgctagaaacaatacaaatgccccagta |
45541090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 45540334 - 45540468
Alignment:
| Q |
19 |
ggaagctcattctcatataccagacatcaaccaagcctccgtgacatcattgtcgtcatcgttccaaaatccattcctaggaccaagtgaggcaaccaac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45540334 |
ggaagctcattctcatataccagacatcaaccaagcccccgtgacatcattgtcgtcatcgttccaaaatccattcataggaccaagtgaggcaaccaac |
45540433 |
T |
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| Q |
119 |
gacactgttgaggatgacacaaacattggtagttc |
153 |
Q |
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| T |
45540434 |
gacactgttgaggatgacacaaacattggtagttc |
45540468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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