View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8796_high_5 (Length: 225)
Name: NF8796_high_5
Description: NF8796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8796_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 8573073 - 8573274
Alignment:
| Q |
11 |
ataatactataaataaacaaagggaagggaagtggaaggtggatgaatatgatatcaaatgggcaccgcacagcacatggccaggaatggacaaagagtg |
110 |
Q |
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| T |
8573073 |
ataatactataaataaacaaagggaagggaagtggaaggtggatgaatatgatatcaaatgggcaccgcacagcacatggccaggaatggacaaagagtg |
8573172 |
T |
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| Q |
111 |
tggtacagagtgtatatgtatcatgtttcaaagaatcaatcaatatca--atatatatagccgtaaaagggtactagtaaaattaaaatatagagggaaa |
208 |
Q |
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| T |
8573173 |
tggtacagagtgtatatgtatcatgtttcaaagaatcaatcaatatcaatatatatatagccgtaaaagggtactagtaaaattaaaatatagagggaaa |
8573272 |
T |
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| Q |
209 |
ct |
210 |
Q |
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| T |
8573273 |
ct |
8573274 |
T |
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