View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8796_high_6 (Length: 223)
Name: NF8796_high_6
Description: NF8796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8796_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 6018856 - 6018675
Alignment:
| Q |
11 |
tgagatgaacaaatacacattttttgaaaacaacgaaaatgtataaaagttgttttcatgatttccaaaaatgtataatctatcactaactagtagtatt |
110 |
Q |
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| T |
6018856 |
tgagatgaacaaatacacattttttgaaaacaacgaaaatgtataaaagttgttttcatgatttccaaaaatgtataatctatcactaactagtagtatt |
6018757 |
T |
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| Q |
111 |
tcattttcaagactttcacatcttctaattatagtaagtaagttaaaatgagcatatattttagtaaatgttttcacaaact |
192 |
Q |
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| T |
6018756 |
tcattttcaagactttcacatcttctaattatagtaagtaagttaaaatgagcatatattttagtaaatgttttcacaaact |
6018675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 31671699 - 31671739
Alignment:
| Q |
150 |
aagttaaaatgagcatatattttagtaaatgttttcacaaa |
190 |
Q |
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| T |
31671699 |
aagttaaaatgaacatatattttagaaaatgttttcacaaa |
31671739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 31906012 - 31905972
Alignment:
| Q |
150 |
aagttaaaatgagcatatattttagtaaatgttttcacaaa |
190 |
Q |
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| T |
31906012 |
aagttaaaatgaacatatattttagaaaatgttttcacaaa |
31905972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 31923940 - 31923900
Alignment:
| Q |
150 |
aagttaaaatgagcatatattttagtaaatgttttcacaaa |
190 |
Q |
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| T |
31923940 |
aagttaaaatgaacatatattttagaaaatgttttcacaaa |
31923900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 25144735 - 25144787
Alignment:
| Q |
38 |
aaacaacgaaaatgtataaaagttgttttcatgatttccaaaaatgtataatc |
90 |
Q |
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|||||| ||||||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
25144735 |
aaacaatgaaaatggcaaaaacttgttttcatgattttcaaaaatgtataatc |
25144787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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