View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8796_low_2 (Length: 403)
Name: NF8796_low_2
Description: NF8796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8796_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 172 - 383
Target Start/End: Original strand, 8926657 - 8926868
Alignment:
| Q |
172 |
gaattagaataattaattttcccatacataaatctccaggtgattatgttcctgttgacatgcttgcttggctctatccaaacactttgagatactgtgg |
271 |
Q |
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| T |
8926657 |
gaattagaataattaattttcccatacataaatctgcaggtgattatgttcctgttgacatgcttgcttggctctattcaaacactttgagatactgtgg |
8926756 |
T |
|
| Q |
272 |
tattaaggagctgtcaaagtgtgtgatgaggacttgttaacttgcttgcttgatactgttcaaatactcattatcactctaagtaaaaataaatgaaaac |
371 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926757 |
tattaaggagctgtcaaagtgtgcgatgaggacttgttaacttgcttgcttgctgctgttcaaatactcattatcactctaagtaaaaataaatgaaaac |
8926856 |
T |
|
| Q |
372 |
aattgtgtacaa |
383 |
Q |
| |
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|||||||||||| |
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| T |
8926857 |
aattgtgtacaa |
8926868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 172 - 383
Target Start/End: Original strand, 8936914 - 8937125
Alignment:
| Q |
172 |
gaattagaataattaattttcccatacataaatctccaggtgattatgttcctgttgacatgcttgcttggctctatccaaacactttgagatactgtgg |
271 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8936914 |
gaattagaataattaattttcccatacataaatctgcaggtgattatgttcctgttgacatgcttgcttggctctattcaaacactttgagatactgtgg |
8937013 |
T |
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| Q |
272 |
tattaaggagctgtcaaagtgtgtgatgaggacttgttaacttgcttgcttgatactgttcaaatactcattatcactctaagtaaaaataaatgaaaac |
371 |
Q |
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| T |
8937014 |
tattaaggagctgtcaaagtgtgcgatgaggacttgttaacttgcttgcttgctgctgttcaaatactcattatcactctaagtaaaaataaatgaaaac |
8937113 |
T |
|
| Q |
372 |
aattgtgtacaa |
383 |
Q |
| |
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|||||||||||| |
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| T |
8937114 |
aattgtgtacaa |
8937125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 196 - 383
Target Start/End: Complemental strand, 55028845 - 55028654
Alignment:
| Q |
196 |
tacataaatctccaggtgattatgttcctgttgacatgcttgcttggctctatccaaacactttgagatactgtggtattaaggagctgtcaaagtgtgt |
295 |
Q |
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|||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
55028845 |
tacacaaatctgcaggtgattatgttcatgttgacatgcttgcttggctctatccaaacactttgagatactgtgggatgaaggagctgtcaaagtgtgt |
55028746 |
T |
|
| Q |
296 |
gatgaggacttgtt----aacttgcttgcttgatactgttcaaatactcattatcactctaagtaaaaataaatgaaaacaattgtgtacaa |
383 |
Q |
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| T |
55028745 |
gatgaggacttgttaactaacttgcttgcttgctgttgttcaaatactcattatcactgtaagtaagaataaatgaaaacaattgtgtacaa |
55028654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 373
Target Start/End: Original strand, 19748276 - 19748423
Alignment:
| Q |
226 |
ttgacatgcttgcttggctctatccaaacactttgagatactgtggtattaaggagctgtcaaagtgtgtgatgaggacttgttaacttgcttgcttgat |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||||| || |||||| ||| | |
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| T |
19748276 |
ttgacatgcttgcttggctctatccaaacactttgagatactgtgggatgaaggagcagtcaaagtgtcccatgaggacttgtttacatgcttggttgct |
19748375 |
T |
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| Q |
326 |
actgttcaaatactcattatcactctaagtaaaaataaatgaaaacaa |
373 |
Q |
| |
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|||| |||||| ||||||| || ||||||||| ||||||||||||| |
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| T |
19748376 |
gctgtcgaaatacacattatcgctgtaagtaaaagtaaatgaaaacaa |
19748423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 225 - 369
Target Start/End: Complemental strand, 14808231 - 14808087
Alignment:
| Q |
225 |
gttgacatgcttgcttggctctatccaaacactttgagatactgtggtattaaggagctgtcaaagtgtgtgatgaggacttgttaacttgcttgcttga |
324 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||| ||||||||||||| || ||||| |||| |
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| T |
14808231 |
gttgacatgcttgcttggctctatccaaacactttgacatattgtgggatgaaggagctgtcaaagtgtactatgaggacttgtttacatgcttacttgc |
14808132 |
T |
|
| Q |
325 |
tactgttcaaatactcattatcactctaagtaaaaataaatgaaa |
369 |
Q |
| |
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| |||| ||||||| ||||||| || ||||||||| ||||||||| |
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| T |
14808131 |
tgctgtccaaatacacattatcgctgtaagtaaaagtaaatgaaa |
14808087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 223 - 373
Target Start/End: Complemental strand, 25645955 - 25645805
Alignment:
| Q |
223 |
ctgttgacatgcttgcttggctctatccaaacactttgagatactgtggtattaaggagctgtcaaagtgtgtgatgaggacttgttaacttgcttgctt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
25645955 |
ctgttgacatgcttgcttggctctatccaaacacttagagatactgtgggatgaaggagctgtcaaagtgtcccatgaggacttgttaacatgcttgctt |
25645856 |
T |
|
| Q |
323 |
gatactgttcaaatactcattatcactctaagtaaaaataaatgaaaacaa |
373 |
Q |
| |
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| | |||| ||||||| ||||||| || ||||||||| ||||||||||||| |
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| T |
25645855 |
gctgctgtccaaatacacattatcgctgtaagtaaaagtaaatgaaaacaa |
25645805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 373
Target Start/End: Original strand, 9020847 - 9020996
Alignment:
| Q |
223 |
ctgttgacatgcttgcttggctctatccaaacactttgagatactgtggtattaaggagctgtcaaagtgtgtgatgaggacttgttaacttgcttgctt |
322 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||| |||| |||||||| || ||||||||| |
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| T |
9020847 |
ctgttaacatgcttgcttggctttatccaaacactttgagataccgtgggag-aaggagctgtcaaagtgtcccatgaagacttgtttacatgcttgctt |
9020945 |
T |
|
| Q |
323 |
gatactgttcaaatactcattatcactctaagtaaaaataaatgaaaacaa |
373 |
Q |
| |
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| | ||| ||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
9020946 |
gctgttgtccaaatacacattatcgatgtaagtaaaaataaatgaaaacaa |
9020996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 25081882 - 25081967
Alignment:
| Q |
295 |
tgatgaggacttgttaacttgcttgcttgatactgttcaaat-actcattatcactctaagtaaaaataaatgaaaacaattgtgta |
380 |
Q |
| |
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||||||||||||||| | |||||| ||| | |||| || || || |||||||||| |||||||||| ||||||||||||||||||| |
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| T |
25081882 |
tgatgaggacttgtttatatgcttgtttgttgctgtccatattacacattatcactgtaagtaaaaa-aaatgaaaacaattgtgta |
25081967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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