View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8797_high_1 (Length: 363)

Name: NF8797_high_1
Description: NF8797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8797_high_1
NF8797_high_1
[»] chr6 (1 HSPs)
chr6 (19-354)||(1613071-1613406)
[»] chr8 (2 HSPs)
chr8 (254-351)||(14325753-14325850)
chr8 (20-102)||(14325559-14325641)
[»] chr3 (1 HSPs)
chr3 (256-345)||(4491276-4491365)
[»] chr7 (1 HSPs)
chr7 (272-354)||(35463300-35463382)
[»] chr5 (1 HSPs)
chr5 (303-339)||(15918484-15918520)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 1613406 - 1613071
Alignment:
Q  19 acatcctcaaccaaaccaagaaattttaaagccttactagcagagtccattgtagtaactatcatttcaatacaaaaccacaaagaataaaaaatagtaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1613406 acatcctcaaccaaaccaagaaattttaaagccttactagcagagtccattgtagtaactatcatttcaatacaaaaccacaaagaataaaaaatagtaa 1613307  T
Q  119 gtatcattcgtcaatcttagaatccaaaaaatcacacattcaaccatacaaactttgctcgtatgnnnnnnnncccatcacattacatcattaaaatata 218  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||        |||||||||||||||||||||||||||    
T  1613306 gtatcattcgtcaatcttagaatccaaaaaagcacacattcaaccatacaaactttgctcatatgttttttttcccatcacattacatcattaaaatata 1613207  T
Q  219 ataaagtatacatcaaaattnnnnnnnnntagcatagaaaagtaccatgaaaagaagaagttttgaggagcctctcaatcaacattctatcaataatact 318  Q
    ||||| |||| |||||||||         | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1613206 ataaaatataaatcaaaattaaaaaaaaattgcatagaaaagtaccatgaaaagaagaagttttgaggagcctctcaatcaacattctatcaataatact 1613107  T
Q  319 atcatcaacagccaaaacatggaactgagtctctgc 354  Q
    ||||||||||||||||||||||||||||||||||||    
T  1613106 atcatcaacagccaaaacatggaactgagtctctgc 1613071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 254 - 351
Target Start/End: Original strand, 14325753 - 14325850
Alignment:
Q  254 agaaaagtaccatgaaaagaagaagttttgaggagcctctcaatcaacattctatcaataatactatcatcaacagccaaaacatggaactgagtctc 351  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14325753 agaaaagtaccattaaaagaagaagttttgaggagcctctcaatcaacattctatcaataatactatcatcaacagccaaaacatggaactgattctc 14325850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 14325559 - 14325641
Alignment:
Q  20 catcctcaaccaaaccaagaaattttaaagccttactagcagagtccattgtagtaactatcatttcaatacaaaaccacaaa 102  Q
    |||| |||||||||||||||||||| || |||||||||||||| |||| |||||||||| | ||||||||||||||| |||||    
T  14325559 catcttcaaccaaaccaagaaatttcaaggccttactagcagaatccactgtagtaactgtgatttcaatacaaaacaacaaa 14325641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 4491365 - 4491276
Alignment:
Q  256 aaaagtaccatgaaaagaagaagttttgaggagcctctcaatcaacattctatcaataatactatcatcaacagccaaaacatggaactg 345  Q
    |||| |||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||| ||| |||||||||||||||||||| |||||    
T  4491365 aaaattaccatgaaatgaagaggttttgagaagcctttcaatcaacattctgtcaataacactgtcatcaacagccaaaacatgaaactg 4491276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 35463300 - 35463382
Alignment:
Q  272 gaagaagttttgaggagcctctcaatcaacattctatcaataatactatcatcaacagccaaaacatggaactgagtctctgc 354  Q
    ||||| |||||||| || |||||||| | | | ||||| || ||||| |||||||||||||||||||| ||||| | ||||||    
T  35463300 gaagaggttttgagaagtctctcaataagcttcctatctatgatactgtcatcaacagccaaaacatgaaactgtgactctgc 35463382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 15918520 - 15918484
Alignment:
Q  303 ttctatcaataatactatcatcaacagccaaaacatg 339  Q
    ||||||||| || ||||||||||||||||||||||||    
T  15918520 ttctatcaacaagactatcatcaacagccaaaacatg 15918484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University