View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8797_low_3 (Length: 302)
Name: NF8797_low_3
Description: NF8797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8797_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 51436591 - 51436889
Alignment:
| Q |
1 |
gttgattgtaaagttggagtaaaatt---gcttcaaccaagag--tgttaaccatcttagcaactcttaaatagtaaatctgttttcaaacacttaccgt |
95 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51436591 |
gttgattgtaaagttggagtaaaattaaggcttcaaccaagagagtgttgaccatcttaacaactcttaaatagtaaatctgttttcaaacacttaccgt |
51436690 |
T |
|
| Q |
96 |
tcggaatgaagcaatcatcgaaatttttcttacaaaaacccttcatcgtaccaattttcttaacaaatgtagaatcgtacgagtttagaaaa-gatttta |
194 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
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| T |
51436691 |
tcggaatgaagcaatcatcaaaatttttcttacaaaaacccttcatcgtaccaattttcttaacaaatgtagaatcgtacgagttcagaaaaggttttta |
51436790 |
T |
|
| Q |
195 |
acaatccacaaaagtccgatttagaattaatgcccgaaattttgtgctagctcaagataaacaaaatacgaagaagaatatgaacattgatagaataat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51436791 |
acaatccacaaaagtccgatttagaattaatgcccgaaattttatgctagctcaagataaacaaaatacgaagaagaatatgaacattgatagaataat |
51436889 |
T |
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