View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8798_low_1 (Length: 440)
Name: NF8798_low_1
Description: NF8798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8798_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 43362126 - 43362557
Alignment:
| Q |
1 |
gggtgggaattgggtgcacgtgacttttaatgtgatgttttaatctccactgtgcattttttatttaatggttgagatctattctcatcattctcggata |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43362126 |
gggtgagaattgggtgcacgtgacttttaatgtgatgttttaatctcaactgtgcattttttatttaatggttgagatctattctcatcattctcacata |
43362225 |
T |
|
| Q |
101 |
agatgggcaaaggtagttgcatagtaga------------ttgggtggacccaatatttgttccacaatgctttccatcacaacttaaaacttgtgaact |
188 |
Q |
| |
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|||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43362226 |
agatggacaaaggtaattggatagtagaaaatgtcaaagattgggtggacccaatatttgttccacaatgctttccatcacaacttaaaacttgtgaact |
43362325 |
T |
|
| Q |
189 |
tttagggcaagaaggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgcaaccatggaaatctattgtagtgacgaactcaaactag |
288 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43362326 |
tttagggcaagacggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgcaaccatggaaatctattgcagtgacgaactcaaactag |
43362425 |
T |
|
| Q |
289 |
aaagagaattatccttatgtccaagggcctctcctacatgtgaagttattattcaacacctatttaagtagtacttctatatacttctactgtgaacctt |
388 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43362426 |
aaagagaattgtccttatgtccaagggcctctcctacatgtgaagttattattcaacacctatttaagtagtacttctatatacttctactgtgaacctt |
43362525 |
T |
|
| Q |
389 |
gatggtcatgcatgaacattgtcttagtccacaagt |
424 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
43362526 |
gatggt----catgaacattgtcttagtccacaagt |
43362557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 49426545 - 49426405
Alignment:
| Q |
196 |
caagaaggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgc-aaccatggaaatctattgtagtgacgaactcaaactagaaagag |
294 |
Q |
| |
|
|||||| |||||||| ||||||||| | ||||| | ||||||||||||||||||| ||||||| ||||| ||||| || | ||||||||| | | |||| |
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|
| T |
49426545 |
caagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagaactcaaaacatatagag |
49426446 |
T |
|
| Q |
295 |
aattatccttatgtccaagggcctctcctacatgtgaagtt |
335 |
Q |
| |
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| |||| ||||| ||||||||||| |||| |||||||||| |
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| T |
49426445 |
agttattattatgcccaagggcctcccctatatgtgaagtt |
49426405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 300
Target Start/End: Complemental strand, 17641275 - 17641093
Alignment:
| Q |
128 |
attgggtggacccaatatttgttccacaatgctttccatcacaacttaaaacttg--------tgaacttt-tagggcaagaaggtgagcttttattggc |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||| ||| ||||||| ||| | ||||| |||| |||||||| |||||| ||||||| |
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|
| T |
17641275 |
attgggtggacccaatatttgttccgcaatgtttttcattacaccttaaaatttgcaaagttctaaacttcataggccaagaaggcgagcttctattggc |
17641176 |
T |
|
| Q |
219 |
aatatatattgtgaagaatgcaagagttttgc-aaccatggaaatctattgtagtgacgaactcaaactagaaagagaattat |
300 |
Q |
| |
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|| | | ||| |||||||||||| |||||||| ||||||| |||| |||| ||||| || |||||| |||||||||| |||| |
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|
| T |
17641175 |
aagaaacattctgaagaatgcaaaagttttgcaaaccatgaaaatacattgcagtgaagacctcaaaatagaaagagagttat |
17641093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 337
Target Start/End: Complemental strand, 49437871 - 49437751
Alignment:
| Q |
218 |
caatatatattgtgaagaatgcaagagttttgcaacca-tggaaatctattgtagtgacgaactcaaactagaaagagaattatccttatgtccaagggc |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || || ||||| | || | | | ||| || | |||||||||||||||||||| ||||||| |
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| T |
49437871 |
caatatatattctgaagaatgcaagagttttgcaaacaatgtcaatctgtggtgttaaagctctcgaagttgaaagagaattatccttatgcccaagggt |
49437772 |
T |
|
| Q |
317 |
ctctcctacatgtgaagttat |
337 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
49437771 |
ctctcctatatgtgaagttat |
49437751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 341
Target Start/End: Original strand, 49415963 - 49416182
Alignment:
| Q |
137 |
acccaatatttgttccacaatgctttccatcacaacttaaaacttg--------tgaactt-ttagggcaagaaggtgagcttttattggcaatatatat |
227 |
Q |
| |
|
|||||||||||||||||||| | || ||| ||||||||||||||| ||||||| ||||| ||||||| |||||| ||||||||| ||| || |
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|
| T |
49415963 |
acccaatatttgttccacaaagtctttcattacaacttaaaacttgcaaacttctgaacttcttaggcgaagaaggcgagcttctattggcaagatacat |
49416062 |
T |
|
| Q |
228 |
tgtgaagaatgcaagagttttgc-aaccatggaaatctattgtagtgacgaactcaaactagaaagagaattatccttatgtccaa-----gggcctctc |
321 |
Q |
| |
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| |||||||||| |||||||||| ||||||| |||| |||| || || || | |||| | | |||||||||| ||| || |||| ||||||||| |
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| T |
49416063 |
tttgaagaatgctagagttttgcaaaccatgaaaatacattgcagcgatgaccccaaaatcggaagagaattactcttgtgcccaagggccgggcctctc |
49416162 |
T |
|
| Q |
322 |
ctacatgtgaagttattatt |
341 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
49416163 |
ctacatgtgaaattattatt |
49416182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 339
Target Start/End: Complemental strand, 49432786 - 49432642
Alignment:
| Q |
196 |
caagaaggtgagcttttattggcaatatatattgtgaagaatgcaagagttttg-caaccatggaaatctattgtagtgacgaactcaaactagaaagag |
294 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||||| | |||||| ||||||||||| ||||||| ||||| ||||| || | || || || || ||||| |
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|
| T |
49432786 |
caagaaagtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatccattgtggtaaagacttcgaaatattaagag |
49432687 |
T |
|
| Q |
295 |
aattatccttatgtccaagggcctctcctacatgtgaagttatta |
339 |
Q |
| |
|
| ||| |||||| | ||||| ||||||| |||||||||||||| |
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|
| T |
49432686 |
agttactcttatgccatagggcttctcctatatgtgaagttatta |
49432642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 49445394 - 49445344
Alignment:
| Q |
202 |
ggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgcaa |
252 |
Q |
| |
|
||||||||| | |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
49445394 |
ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaa |
49445344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 48718387 - 48718284
Alignment:
| Q |
1 |
gggtgggaattgggtgcacgtgacttttaatgtgatgttttaatctccactgtgcattttttatttaatggttgagatctattctcatcattctcggata |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||| |||||||||||||||| ||| |
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|
| T |
48718387 |
gggtgagaattgggtgcaaatgacttttaatgtgatgttttaatctcaaccgtgcatttttcatttaatggttaagatttattctcatcattctcacata |
48718288 |
T |
|
| Q |
101 |
agat |
104 |
Q |
| |
|
|||| |
|
|
| T |
48718287 |
agat |
48718284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 48718898 - 48718958
Alignment:
| Q |
20 |
gtgacttttaatgtgatgttttaatctccactgtgc---attttttatttaatggttgaga |
77 |
Q |
| |
|
|||||||||||||||||||||||||||| || || | ||||||||||||||| |||||| |
|
|
| T |
48718898 |
gtgacttttaatgtgatgttttaatctcaaccgtacattattttttatttaatgcttgaga |
48718958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38367225 - 38367283
Alignment:
| Q |
20 |
gtgacttttaatgtgatgttttaatctccactgtgcattttttatttaatggttgagat |
78 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||||||||||||||||||| |||| |
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|
| T |
38367225 |
gtgagttttaatgtgatgttttaatcttaaccatgcattttttatttaatggttaagat |
38367283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 38366670 - 38366625
Alignment:
| Q |
30 |
atgtgatgttttaatctccactgtgcattttttatttaatggttga |
75 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
38366670 |
atgtgatgttttaatctcaaccatgcattttttatttgatggttga |
38366625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 1024808 - 1024755
Alignment:
| Q |
128 |
attgggtggacccaatatttgttccacaatgctttccatcacaacttaaaactt |
181 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
1024808 |
attgggtggacccagaatttgttccacaatgctttttatcacaccttagaactt |
1024755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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