View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8798_low_2 (Length: 407)
Name: NF8798_low_2
Description: NF8798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8798_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 2144240 - 2144066
Alignment:
| Q |
19 |
tctatgtgggctgttgtaatccatgtaccaatcctgcatggttttgtgtgctagaagtgaaccaaataaaaggaaacttcttttccacactcacatgtac |
118 |
Q |
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| T |
2144240 |
tctatgtgggctgttgtaatccatgtaccaatcctacatggttttgtgtgctagaagtgaaccaaataaaaggaaacttcttttccacactcacatgtac |
2144141 |
T |
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| Q |
119 |
acactggatggatagatcaggaaaaaacaccattgctttttgttctctggatgaatgaatctgcacataatatgt |
193 |
Q |
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| T |
2144140 |
acactggatggatagatcaggaaaaaacaccattgttttttgttctctggatggatgaatctgcacataatatgt |
2144066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 227 - 388
Target Start/End: Complemental strand, 2144014 - 2143853
Alignment:
| Q |
227 |
gaaatgatttgaataatttatccaagatcttaaaaccccnnnnnnnnctttctcgaatacagttgttgaattctttcttgttttttccccaaagtctgtc |
326 |
Q |
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| T |
2144014 |
gaaatgatttgaataatttatccaagatcttaaaaccccaaaaaaaactttatcgaatacagttgttgaattcttgcttgttttttccccaaagtctgtc |
2143915 |
T |
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| Q |
327 |
tctcctcgcctctcctaaagtctcaaacatagctttagagatgaatcatggaggccatggta |
388 |
Q |
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| T |
2143914 |
tctcctcgcctctcctaaagtctcaaacatagctttagagatgaatcatggaggccatggta |
2143853 |
T |
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