View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8798_low_5 (Length: 358)
Name: NF8798_low_5
Description: NF8798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8798_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 46558146 - 46557797
Alignment:
| Q |
10 |
gacatcacatctcaatccaaaatatgaatgcatatggtatatgagttaccattcttacatattcaacatttaattcattcgtaattgatgcgagattagt |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46558146 |
gacaccacatctcaatccaaaatatgaatgcatatggtatatgagttaccactcttacatattcaacatttaattcattcgtaattgatgcgagataagt |
46558047 |
T |
|
| Q |
110 |
cactcgcacttgaactcaacaagtaagacaatgttt--------------cgagtaaaacacatgtgttgttttcttaaacatcaatgtttaaatacata |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46558046 |
cactcgcacttgaactcaacaagtaagacaatgtttggaggacaatgtttcgagtaaaacgcatgtgttgttttcttaaacatcaatgtttaaatacata |
46557947 |
T |
|
| Q |
196 |
ttgatctttgctccacattacgaaaattcttataaaatagataaatatcaaatatttaaaattccacatc----aagaggtatatctggggatgattgtg |
291 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46557946 |
ttgacctttgctccacattacaaaaattcttataaaatagataaatatcaaatatttaaaattccacatcaattaagaggtatatctggggatgattgtg |
46557847 |
T |
|
| Q |
292 |
aatggcaaaagaagaaatnnnnnnnngtgaagaggcatctgatgctatatt |
342 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46557846 |
aatggcaaaagaagaaat-aaaaaaagtgaagaggcatctgatgctatatt |
46557797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University